Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F05_e38_11.seq
         (1564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41030-1|AAA82362.2|  371|Caenorhabditis elegans Hypothetical pr...    82   9e-16
AF039046-11|AAD34651.3|  388|Caenorhabditis elegans Hypothetical...    58   1e-08
U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical pr...    30   3.9  

>U41030-1|AAA82362.2|  371|Caenorhabditis elegans Hypothetical
           protein C44C1.2 protein.
          Length = 371

 Score = 82.2 bits (194), Expect = 9e-16
 Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
 Frame = +3

Query: 414 LGYVTPWNNKGYEVAKTWAPKFNYISPVWLQIKRQSPNIYI----VSGLHDVDHAWMKSV 581
           L Y+TPWN  GYE+A+  A K  ++SPVW Q K  S N  +    + G H+++  W++ +
Sbjct: 62  LAYITPWNRHGYELAEKTAHKLTHVSPVWFQAKAFSENGKLDGCKIEGTHEINRDWIEKL 121

Query: 582 KQKGSNNNLKILPRILFENWQPSDLKAFFME 674
           ++K  N N+ I+PRILF+ W   ++K   M+
Sbjct: 122 REK--NENIAIVPRILFDGWSAQEMKNLLMD 150


>AF039046-11|AAD34651.3|  388|Caenorhabditis elegans Hypothetical
           protein R09B5.12 protein.
          Length = 388

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 35/118 (29%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
 Frame = +3

Query: 414 LGYVTPWNNKGYEVAKTWAPKFNYISPVWLQI-----KRQSPNIYIVSGLHDVDHAWMKS 578
           L +VTPWN +G+ +A+  A +  YISPVW ++       Q  +   + G  D++  ++++
Sbjct: 71  LAFVTPWNPRGFMLARKRAARLTYISPVWFRVHPLFDTDQELSDVGIYGKKDINPDFIRA 130

Query: 579 VKQKGSNNNLKILPRILFENWQPSDLKAFFMEPTSHSEQKAFIEEIKKTCKQWKFDGL 752
           +++  SN ++KI+PR  F+ ++ + LK F ++      QK   + +   C +  FDGL
Sbjct: 131 LRK--SNPDIKIVPRFYFDEFKSAILKEFVVKEA--LAQKVG-QTLANFCHKHGFDGL 183


>U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical
           protein C16C8.16 protein.
          Length = 592

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 255 KKGQKGVKPQEGPRKNNVLDRKLVDEAPFAKDIMKYHATYHQDVATRNFNNAV 413
           KK ++ V P + P +  + D+KL ++ PF K  +  H   +  V  R +N+ V
Sbjct: 483 KKIEESVAPVKTPLEAPIEDKKLDNKKPFFKITVHLHGGPNASVYGRKYNHLV 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,425,254
Number of Sequences: 27780
Number of extensions: 502842
Number of successful extensions: 989
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4514820630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)