Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F05_e38_11.seq
         (1564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01040.1 68417.m00141 glycosyl hydrolase family 18 protein co...    83   5e-16
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si...    31   2.7  
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide...    29   6.3  

>At4g01040.1 68417.m00141 glycosyl hydrolase family 18 protein
           contains Pfam profile PF00704: Glycosyl hydrolases
           family 18
          Length = 430

 Score = 83.0 bits (196), Expect = 5e-16
 Identities = 45/148 (30%), Positives = 86/148 (58%)
 Frame = +3

Query: 345 KDIMKYHATYHQDVATRNFNNAVLGYVTPWNNKGYEVAKTWAPKFNYISPVWLQIKRQSP 524
           ++I+  H+   ++ +TR+++  VL Y+TPWN+KGY++AK +  KF ++SPVW  +K Q  
Sbjct: 82  QEILTEHSKASEN-STRHYDYPVLAYITPWNSKGYDMAKIFNSKFTHLSPVWYDLKSQGS 140

Query: 525 NIYIVSGLHDVDHAWMKSVKQKGSNNNLKILPRILFENWQPSDLKAFFMEPTSHSEQKAF 704
            + ++ G H+ D  W++ ++ +G   N  ILPR++ E   P +     M       +KA 
Sbjct: 141 GL-VLEGRHNADKGWIQELRSRG---NALILPRVVLEA-IPGE-----MLNKKKLREKA- 189

Query: 705 IEEIKKTCKQWKFDGLXS*DAFAXWKXH 788
           I  I   CK+ +++G+   ++++ W  +
Sbjct: 190 ISLIVTECKEMEYNGIVL-ESWSRWAAY 216


>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 363

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +3

Query: 525 NIYIVSGLHDVDHA-WMKSVKQKGSNNNLKILPRILFENWQPSDLKAFFMEPTSHSEQKA 701
           N  +VSG H+ + + + K VK+K  N +++ L  I   N   S   +    PTS   +K+
Sbjct: 53  NSVVVSGAHEQEFSNFTKIVKKK--NPHVQTLLSIGGRNADKSAFASMASNPTS---RKS 107

Query: 702 FIEEIKKTCKQWKFDGL 752
           FI     + + ++FDGL
Sbjct: 108 FIWSAISSARYYRFDGL 124


>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
           identical to SWISS-PROT:P17745 elongation factor Tu,
           chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
          Length = 476

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 161 VLCSWNKHKSRICYSVFTNSKLKTLT 84
           +LCS++     +C ++ T+ KLKTLT
Sbjct: 15  ILCSYSSPSPSLCPAISTSGKLKTLT 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,006,122
Number of Sequences: 28952
Number of extensions: 468961
Number of successful extensions: 876
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4202426112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)