Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F04_e30_12.seq
         (1545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   6.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   6.9  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 198 TLHRYYIFCSNVIRDRTYKAXR*TW 124
           TLH  YIF S + RD TY+     W
Sbjct: 277 TLHARYIFASFISRDTTYQLIIAIW 301


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +3

Query: 1224 PXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPP 1328
            P P P  + P P  +  P P   P   G   P PP
Sbjct: 733  PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +3

Query: 1224 PXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337
            P P+P  + P       P P   PP      P PP  P
Sbjct: 744  PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,272,625
Number of Sequences: 5004
Number of extensions: 72842
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 868192212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)