Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_F04_e30_12.seq
(1545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1433 + 26513728-26514135,26525534-26526280 31 1.8
03_05_0576 + 25765137-25766420 31 1.8
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 31 2.4
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 5.6
11_01_0066 - 536281-537196,537397-537452 29 7.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 7.5
07_03_1432 - 26508135-26508881,26509301-26509708 29 7.5
03_01_0515 - 3864796-3865425 29 7.5
08_01_0260 + 2127396-2127962 29 9.9
08_01_0259 + 2123393-2123555,2123670-2124070 29 9.9
>07_03_1433 + 26513728-26514135,26525534-26526280
Length = 384
Score = 31.5 bits (68), Expect = 1.8
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 1230 PSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXPG 1340
PSP + P P + P P PP+ SP PP PG
Sbjct: 56 PSPAPVSPSPPTTYPP-PSTTPPNPAPTSPSPP-APG 90
>03_05_0576 + 25765137-25766420
Length = 427
Score = 31.5 bits (68), Expect = 1.8
Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Frame = +3
Query: 1209 KKXGGP----XPSPX-ALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337
KK GGP PSP + P P S P P PP S PP P
Sbjct: 60 KKRGGPEAPPSPSPSPSPSPPPQPSSPPPPPPSPPPAAAVSVSPPTQP 107
>06_03_1006 + 26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 31.1 bits (67), Expect = 2.4
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +3
Query: 1203 PXKKXGGPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPP 1328
P GGP P+P P P S GP P+ P PP
Sbjct: 144 PPSTPGGPAPTPTPTRPAPSPSPT-GPPTPSPTNPNLEPSPP 184
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.9 bits (64), Expect = 5.6
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Frame = +3
Query: 1221 GPXPSPXALXPXPXXSXXPGPXXXPP----SXGXXSPCPPXXPG 1340
GP P P P PGP PP G P PP PG
Sbjct: 348 GPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPG 391
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = +3
Query: 1203 PXKKXGGPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337
P P PSP + P P + P P P+ SP PP P
Sbjct: 216 PPPSIATPPPSPAS--PPPPSTATPPPPSPTPTTTRASPTPPPIP 258
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +3
Query: 1224 PXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337
P PSP A P P P P P+ P PP P
Sbjct: 535 PSPSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPPPP 572
>07_03_1432 - 26508135-26508881,26509301-26509708
Length = 384
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 1230 PSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPP 1328
PSP +L P P P PPS SP PP
Sbjct: 35 PSPPSLSPS-TPPTYPPPSSTPPSLAPVSPSPP 66
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Frame = +3
Query: 1224 PXPSPXALX--PXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337
P PSP A P P P P PPS P P P
Sbjct: 29 PAPSPEAEASPPSPPTEASPPPLAPPPSVTSSPPPPAAGP 68
>08_01_0260 + 2127396-2127962
Length = 188
Score = 29.1 bits (62), Expect = 9.9
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 1221 GPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPP 1328
G P+P L P P P PP+ G P PP
Sbjct: 126 GSNPTPSPLAPLPRTPTVMAPNAMPPTNG-GRPTPP 160
>08_01_0259 + 2123393-2123555,2123670-2124070
Length = 187
Score = 29.1 bits (62), Expect = 9.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 1221 GPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPP 1328
G P+P + P P P PP+ G P PP
Sbjct: 125 GSNPAPSPMTPRPRTPTAMAPNAMPPTAG-GRPVPP 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,670,162
Number of Sequences: 37544
Number of extensions: 509956
Number of successful extensions: 1235
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4977304332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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