Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F04_e30_12.seq
         (1545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   32   1.1  
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               31   1.9  
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)            31   2.5  
SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.3  

>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 15/51 (29%), Positives = 17/51 (33%)
 Frame = +3

Query: 1176 PDXXXXEXXPXKKXGGPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPP 1328
            P     +  P    G P P    + P P     P P   PP  G   P PP
Sbjct: 330  PPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPPPP 380


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
 Frame = +3

Query: 1164 GMXLPDXXXXEX--XPXKKXGGPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337
            G+ LPD    +    P    GG  P P    P P     P P   PP  G   P PP  P
Sbjct: 266  GLDLPDVLEHDIPEVPDIVTGGGAPVPP---PPPADGSAPAPPPPPPPGGAPPPPPPPPP 322


>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
          Length = 184

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
 Frame = +3

Query: 1209 KKXGG--PXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPP 1328
            K  GG  P P P    P P  +  PGP   PP      P PP
Sbjct: 115  KYLGGYVPPPPPTGTLPPPPVTPPPGPETPPPPDTPAPPVPP 156


>SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1167

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 105  SVIXQSLLKSLVPNXLQPGGXH*XLERPPPR 13
            +V+ Q++++ L      P G H  LERPPPR
Sbjct: 1059 NVLRQNMVRYLEQIPFTPDGTHLVLERPPPR 1089


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,863,534
Number of Sequences: 59808
Number of extensions: 557063
Number of successful extensions: 1071
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5035506333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)