Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F04_e30_12.seq
         (1545 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF451977-1|AAL49758.1| 1431|Homo sapiens cask-interacting protei...    35   0.92 
AB037727-1|BAA92544.1| 1154|Homo sapiens KIAA1306 protein protein.     35   0.92 
AK094198-1|BAC04307.1|  408|Homo sapiens protein ( Homo sapiens ...    32   4.9  
BC008308-1|AAH08308.2|  759|Homo sapiens cullin 4A protein.            32   6.5  
AY365124-1|AAR13072.1|  759|Homo sapiens cullin 4A protein.            32   6.5  
AL136221-4|CAM18410.1|  759|Homo sapiens cullin 4A protein.            32   6.5  
AB178950-1|BAD93235.1|  759|Homo sapiens cullin-4A protein.            32   6.5  

>AF451977-1|AAL49758.1| 1431|Homo sapiens cask-interacting protein 1
            protein.
          Length = 1431

 Score = 34.7 bits (76), Expect = 0.92
 Identities = 20/68 (29%), Positives = 23/68 (33%)
 Frame = +3

Query: 1221 GPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXPGXXXXXIXXEXFRRXXXXXXG 1400
            GP P+P      P     P     PPS G  SP  P  PG     +  +  R        
Sbjct: 1296 GPSPAPSPARQPPAALAKPP--GTPPSLGA-SPAKPPSPGAPALHVPAKPPRAAAAAAAA 1352

Query: 1401 VXXPXAPP 1424
               P APP
Sbjct: 1353 AAAPPAPP 1360


>AB037727-1|BAA92544.1| 1154|Homo sapiens KIAA1306 protein protein.
          Length = 1154

 Score = 34.7 bits (76), Expect = 0.92
 Identities = 20/68 (29%), Positives = 23/68 (33%)
 Frame = +3

Query: 1221 GPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXPGXXXXXIXXEXFRRXXXXXXG 1400
            GP P+P      P     P     PPS G  SP  P  PG     +  +  R        
Sbjct: 1019 GPSPAPSPARQPPAALAKPP--GTPPSLGA-SPAKPPSPGAPALHVPAKPPRAAAAAAAA 1075

Query: 1401 VXXPXAPP 1424
               P APP
Sbjct: 1076 AAAPPAPP 1083


>AK094198-1|BAC04307.1|  408|Homo sapiens protein ( Homo sapiens cDNA
            FLJ36879 fis, clone BGGI11000193. ).
          Length = 408

 Score = 32.3 bits (70), Expect = 4.9
 Identities = 17/39 (43%), Positives = 17/39 (43%)
 Frame = +3

Query: 1221 GPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337
            GP PSP    P P  S  PGP   P      SPCP   P
Sbjct: 370  GPGPSPG---PGPGPSPGPGPGPSPGPGPGPSPCPGPSP 405


>BC008308-1|AAH08308.2|  759|Homo sapiens cullin 4A protein.
          Length = 759

 Score = 31.9 bits (69), Expect = 6.5
 Identities = 23/84 (27%), Positives = 32/84 (38%)
 Frame = -1

Query: 1056 RKGXXNXNXGAXKGLXXEGSXXAGTXPPNPPVGSKXIXIXXITXYSGLPGGXVEXKSGRS 877
            RKG  +   G   GL    +  A    P    GSK + I        LP    +    + 
Sbjct: 7    RKGSFSALVGRTNGLTKPAALAAAPAKPGGAGGSKKLVIKNFRDRPRLPDNYTQDTWRKL 66

Query: 876  HRAISIXQSIXPNDSIRXCLSKLF 805
            H A+   QS   + SIR  L +L+
Sbjct: 67   HEAVRAVQS---STSIRYNLEELY 87


>AY365124-1|AAR13072.1|  759|Homo sapiens cullin 4A protein.
          Length = 759

 Score = 31.9 bits (69), Expect = 6.5
 Identities = 23/84 (27%), Positives = 32/84 (38%)
 Frame = -1

Query: 1056 RKGXXNXNXGAXKGLXXEGSXXAGTXPPNPPVGSKXIXIXXITXYSGLPGGXVEXKSGRS 877
            RKG  +   G   GL    +  A    P    GSK + I        LP    +    + 
Sbjct: 7    RKGSFSALVGRTNGLTKPAALAAAPAKPGGAGGSKKLVIKNFRDRPRLPDNYTQDTWRKL 66

Query: 876  HRAISIXQSIXPNDSIRXCLSKLF 805
            H A+   QS   + SIR  L +L+
Sbjct: 67   HEAVRAVQS---STSIRYNLEELY 87


>AL136221-4|CAM18410.1|  759|Homo sapiens cullin 4A protein.
          Length = 759

 Score = 31.9 bits (69), Expect = 6.5
 Identities = 23/84 (27%), Positives = 32/84 (38%)
 Frame = -1

Query: 1056 RKGXXNXNXGAXKGLXXEGSXXAGTXPPNPPVGSKXIXIXXITXYSGLPGGXVEXKSGRS 877
            RKG  +   G   GL    +  A    P    GSK + I        LP    +    + 
Sbjct: 7    RKGSFSALVGRTNGLTKPAALAAAPAKPGGAGGSKKLVIKNFRDRPRLPDNYTQDTWRKL 66

Query: 876  HRAISIXQSIXPNDSIRXCLSKLF 805
            H A+   QS   + SIR  L +L+
Sbjct: 67   HEAVRAVQS---STSIRYNLEELY 87


>AB178950-1|BAD93235.1|  759|Homo sapiens cullin-4A protein.
          Length = 759

 Score = 31.9 bits (69), Expect = 6.5
 Identities = 23/84 (27%), Positives = 32/84 (38%)
 Frame = -1

Query: 1056 RKGXXNXNXGAXKGLXXEGSXXAGTXPPNPPVGSKXIXIXXITXYSGLPGGXVEXKSGRS 877
            RKG  +   G   GL    +  A    P    GSK + I        LP    +    + 
Sbjct: 7    RKGSFSALVGRTNGLTKPAALAAAPAKPGGAGGSKKLVIKNFRDRPRLPDNYTQDTWRKL 66

Query: 876  HRAISIXQSIXPNDSIRXCLSKLF 805
            H A+   QS   + SIR  L +L+
Sbjct: 67   HEAVRAVQS---STSIRYNLEELY 87


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,672,296
Number of Sequences: 237096
Number of extensions: 3090311
Number of successful extensions: 10663
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10506
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 23074645414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)