BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030623sawa_F04_e30_12.seq (1545 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 5.0 U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 5.0 >Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein C08B11.5 protein. Length = 388 Score = 29.9 bits (64), Expect = 5.0 Identities = 15/37 (40%), Positives = 17/37 (45%) Frame = +3 Query: 1230 PSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXPG 1340 P P + P P + P P PPS G P PP PG Sbjct: 272 PMPPPMPPTPGMTPRPPP---PPSSGMWPPPPPPPPG 305 >U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding protein protein. Length = 398 Score = 29.9 bits (64), Expect = 5.0 Identities = 15/37 (40%), Positives = 17/37 (45%) Frame = +3 Query: 1230 PSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXPG 1340 P P + P P + P P PPS G P PP PG Sbjct: 282 PMPPPMPPTPGMTPRPPP---PPSSGMWPPPPPPPPG 315 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,452,774 Number of Sequences: 27780 Number of extensions: 440426 Number of successful extensions: 969 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 762 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 940 length of database: 12,740,198 effective HSP length: 85 effective length of database: 10,378,898 effective search space used: 4452547242 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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