BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030623sawa_F04_e30_12.seq (1545 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g27850.1 68417.m03999 proline-rich family protein contains pr... 34 0.29 At1g61080.1 68414.m06877 proline-rich family protein 31 2.7 At3g60900.1 68416.m06813 fasciclin-like arabinogalactan-protein ... 30 4.7 At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 29 6.2 At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 29 6.2 At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 29 6.2 At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 29 6.2 >At4g27850.1 68417.m03999 proline-rich family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 577 Score = 33.9 bits (74), Expect = 0.29 Identities = 17/38 (44%), Positives = 17/38 (44%) Frame = +3 Query: 1224 PXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337 P P P L P P S PGP PS G SP P P Sbjct: 167 PPPYPSPLPPPPSPSPTPGPDSPLPSPGPDSPLPLPGP 204 Score = 31.1 bits (67), Expect = 2.0 Identities = 18/45 (40%), Positives = 18/45 (40%) Frame = +3 Query: 1203 PXKKXGGPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337 P P PSP P P S PGP PS G SP P P Sbjct: 238 PTPGPDSPLPSPG---PPPSPSPTPGPDSPLPSPGPDSPLPSPGP 279 >At1g61080.1 68414.m06877 proline-rich family protein Length = 907 Score = 30.7 bits (66), Expect = 2.7 Identities = 15/44 (34%), Positives = 15/44 (34%) Frame = +3 Query: 1209 KKXGGPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXPG 1340 K G P P P P P P PP P PP PG Sbjct: 501 KPLKGSAPPPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPG 544 >At3g60900.1 68416.m06813 fasciclin-like arabinogalactan-protein (FLA10) Length = 422 Score = 29.9 bits (64), Expect = 4.7 Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 1/40 (2%) Frame = +3 Query: 1212 KXGGPXPSPXALX-PXPXXSXXPGPXXXPPSXGXXSPCPP 1328 K P P+P + P P + P P P P PP Sbjct: 335 KSSSPAPAPEPVSAPTPTPAKSPSPVEAPSPTAASPPAPP 374 >At5g54650.2 68418.m06805 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181 Length = 900 Score = 29.5 bits (63), Expect = 6.2 Identities = 14/43 (32%), Positives = 14/43 (32%) Frame = +3 Query: 1209 KKXGGPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337 K P P P P P P PP G P PP P Sbjct: 366 KASAPPPPVPAPQMPSSAGPPRPPPPAPPPGSGGPKPPPPPGP 408 >At5g54650.1 68418.m06804 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181 Length = 900 Score = 29.5 bits (63), Expect = 6.2 Identities = 14/43 (32%), Positives = 14/43 (32%) Frame = +3 Query: 1209 KKXGGPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337 K P P P P P P PP G P PP P Sbjct: 366 KASAPPPPVPAPQMPSSAGPPRPPPPAPPPGSGGPKPPPPPGP 408 >At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) identical to WIP4 protein [Arabidopsis thaliana] gi|18376500|emb|CAC86168; contains Pfam domain, PF00096: Zinc finger, C2H2 type Length = 412 Score = 29.5 bits (63), Expect = 6.2 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = +3 Query: 642 HSFVHPFIH-HCXFLSFILRIFHIQIESFAL 731 HS+ HP IH + F F+ ++ H++I L Sbjct: 23 HSYTHPHIHAYLAFTGFLTQLHHLEISCLLL 53 >At1g20130.1 68414.m02518 family II extracellular lipase, putative contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566) Length = 1006 Score = 29.5 bits (63), Expect = 6.2 Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Frame = +3 Query: 1221 GPXPSPXAL-XPXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337 GP P A P P S P P PP SPCP P Sbjct: 17 GPSSKPVAPPGPSPCPSPPPKPQPKPPPAPSPSPCPSPPP 56 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,863,256 Number of Sequences: 28952 Number of extensions: 401078 Number of successful extensions: 999 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 658 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 962 length of database: 12,070,560 effective HSP length: 84 effective length of database: 9,638,592 effective search space used: 4144594560 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -