Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F04_e30_12.seq
         (1545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27850.1 68417.m03999 proline-rich family protein contains pr...    34   0.29 
At1g61080.1 68414.m06877 proline-rich family protein                   31   2.7  
At3g60900.1 68416.m06813 fasciclin-like arabinogalactan-protein ...    30   4.7  
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    29   6.2  
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    29   6.2  
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ...    29   6.2  
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    29   6.2  

>At4g27850.1 68417.m03999 proline-rich family protein contains
            proline-rich extensin domains, INTERPRO:IPR002965
          Length = 577

 Score = 33.9 bits (74), Expect = 0.29
 Identities = 17/38 (44%), Positives = 17/38 (44%)
 Frame = +3

Query: 1224 PXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337
            P P P  L P P  S  PGP    PS G  SP P   P
Sbjct: 167  PPPYPSPLPPPPSPSPTPGPDSPLPSPGPDSPLPLPGP 204



 Score = 31.1 bits (67), Expect = 2.0
 Identities = 18/45 (40%), Positives = 18/45 (40%)
 Frame = +3

Query: 1203 PXKKXGGPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337
            P      P PSP    P P  S  PGP    PS G  SP P   P
Sbjct: 238  PTPGPDSPLPSPG---PPPSPSPTPGPDSPLPSPGPDSPLPSPGP 279


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = +3

Query: 1209 KKXGGPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXPG 1340
            K   G  P P    P P     P P   PP      P PP  PG
Sbjct: 501  KPLKGSAPPPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPG 544


>At3g60900.1 68416.m06813 fasciclin-like arabinogalactan-protein
            (FLA10)
          Length = 422

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
 Frame = +3

Query: 1212 KXGGPXPSPXALX-PXPXXSXXPGPXXXPPSXGXXSPCPP 1328
            K   P P+P  +  P P  +  P P   P       P PP
Sbjct: 335  KSSSPAPAPEPVSAPTPTPAKSPSPVEAPSPTAASPPAPP 374


>At5g54650.2 68418.m06805 formin homology 2 domain-containing protein
            / FH2 domain-containing protein contains formin homology
            2 domain, Pfam:PF02181
          Length = 900

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +3

Query: 1209 KKXGGPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337
            K    P P P    P       P P   PP  G   P PP  P
Sbjct: 366  KASAPPPPVPAPQMPSSAGPPRPPPPAPPPGSGGPKPPPPPGP 408


>At5g54650.1 68418.m06804 formin homology 2 domain-containing protein
            / FH2 domain-containing protein contains formin homology
            2 domain, Pfam:PF02181
          Length = 900

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +3

Query: 1209 KKXGGPXPSPXALXPXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337
            K    P P P    P       P P   PP  G   P PP  P
Sbjct: 366  KASAPPPPVPAPQMPSSAGPPRPPPPAPPPGSGGPKPPPPPGP 408


>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
           identical to WIP4 protein [Arabidopsis thaliana]
           gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 412

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 642 HSFVHPFIH-HCXFLSFILRIFHIQIESFAL 731
           HS+ HP IH +  F  F+ ++ H++I    L
Sbjct: 23  HSYTHPHIHAYLAFTGFLTQLHHLEISCLLL 53


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
            contains Pfam profile PF00657: GDSL-like
            Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
 Frame = +3

Query: 1221 GPXPSPXAL-XPXPXXSXXPGPXXXPPSXGXXSPCPPXXP 1337
            GP   P A   P P  S  P P   PP     SPCP   P
Sbjct: 17   GPSSKPVAPPGPSPCPSPPPKPQPKPPPAPSPSPCPSPPP 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,863,256
Number of Sequences: 28952
Number of extensions: 401078
Number of successful extensions: 999
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4144594560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)