Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F03_e22_11.seq
         (1599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                          188   8e-48
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   187   2e-47
10_02_0199 + 6668902-6669293,6669825-6669882                           35   0.16 
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239...    34   0.27 
03_05_0366 - 23505755-23506441                                         31   2.5  
11_01_0338 + 2522698-2523213                                           31   3.4  
07_03_1721 - 29023979-29025295                                         29   7.8  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  188 bits (459), Expect = 8e-48
 Identities = 93/166 (56%), Positives = 109/166 (65%), Gaps = 2/166 (1%)
 Frame = +2

Query: 146 RPLVSVYSEKSEVVA--GASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQ 319
           RPLVSV + + ++     +SL L  VF+AP+RPD+V  VH  +S N RQPY VS+ AGHQ
Sbjct: 6   RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65

Query: 320 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWXXXXXXXXXXXXX 499
           TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK W             
Sbjct: 66  TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125

Query: 500 XXXXXXXXXXXXXXLVQARGHIVEKIPELPLVVSDNVXGXHKTKQA 637
                         LV ARGH +E +PELPLV+SD+     KT QA
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQA 171


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  187 bits (455), Expect = 2e-47
 Identities = 91/168 (54%), Positives = 109/168 (64%), Gaps = 1/168 (0%)
 Frame = +2

Query: 137 SVARPLVSVYSEKSEVVA-GASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAG 313
           + ARPLVSV + + ++    A + +P V +APIRPD+V   H  +S N RQPY VS+ AG
Sbjct: 3   AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62

Query: 314 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWXXXXXXXXXXX 493
           HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK W           
Sbjct: 63  HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122

Query: 494 XXXXXXXXXXXXXXXXLVQARGHIVEKIPELPLVVSDNVXGXHKTKQA 637
                           LV ARGH +E +PE PLVVSD++    KT Q+
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQS 170


>10_02_0199 + 6668902-6669293,6669825-6669882
          Length = 149

 Score = 35.1 bits (77), Expect = 0.16
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +2

Query: 266 MSKNARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 436
           +++ A      ++E G    A+SW TGRA A + R R GG  R    A  N   G R
Sbjct: 18  LARAAASSVAANREGGG--GAQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72


>06_02_0298 +
           13921310-13921834,13921923-13922063,13923601-13923951,
           13924071-13924130,13924261-13924380,13924569-13924718
          Length = 448

 Score = 34.3 bits (75), Expect = 0.27
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 432 PPRHMLPNAPCPDLWVPPP 376
           PPRH++P  P P  WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325


>03_05_0366 - 23505755-23506441
          Length = 228

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 212 FVFKAPIRPDLVNDVHVSMSKNAR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 388
           ++  AP   D   +V  S +   R  P C S E   + +AES  TG A  R  R+  G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167

Query: 389 HRSGQGA 409
           + + + A
Sbjct: 168 NDNDEEA 174


>11_01_0338 + 2522698-2523213
          Length = 171

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 363 IRATARPVPQDSALV**PASLLTQ*GWRAFFDIDTWTSLTRSGLMGALNTNGRGSEA 193
           +R+ ARP+P+ +AL   P+S        A   I +  +  R G+M A    G   EA
Sbjct: 68  VRSAARPIPETAALTLVPSSSAAAMAKSAPVRIPSEAAAARRGVMWAAQAGGEDGEA 124


>07_03_1721 - 29023979-29025295
          Length = 438

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 459 HGLVGANIRPPRHMLPNAPCPDLWVP-PPRTRGIRATARPV 340
           +G+VG +  PP H +P  P P    P  P   GI A A PV
Sbjct: 227 NGIVGHSGVPPMHPIPCFPGPPFVYPWSPAWNGIPAMAPPV 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,410,183
Number of Sequences: 37544
Number of extensions: 503902
Number of successful extensions: 1631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5186142276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)