Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F03_e22_11.seq
         (1599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               201   1e-51
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)                    30   5.9  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  201 bits (490), Expect = 1e-51
 Identities = 97/165 (58%), Positives = 112/165 (67%)
 Frame = +2

Query: 143 ARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQT 322
           ARP+++V++E  E  +     LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2   ARPVITVFNENGE--SAGQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59

Query: 323 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWXXXXXXXXXXXXXX 502
           SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK W              
Sbjct: 60  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRF 119

Query: 503 XXXXXXXXXXXXXLVQARGHIVEKIPELPLVVSDNVXGXHKTKQA 637
                        L+ ARGH +EKI E+PLV+SD +    KT  A
Sbjct: 120 AVCSALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAA 164


>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
          Length = 403

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 215 QTGGGAKPLRRPHSSPNTPTLKVGLLTDSFRFISEVIPPKNTIDGGKDHPS 63
           Q    A P R      +TP  +   LT +F F  E +PP+  +D G D  S
Sbjct: 177 QHSAPASPAREEKERKSTPVREPLNLTRNFPF--ENVPPRGRVDSGSDRTS 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,879,955
Number of Sequences: 59808
Number of extensions: 485332
Number of successful extensions: 1188
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5246786319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)