Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F03_e22_11.seq
         (1599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   182   5e-46
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    31   1.7  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    31   1.7  
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   3.0  
U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death abno...    30   4.0  
AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate ada...    30   4.0  
U41535-6|AAK67248.1|  482|Caenorhabditis elegans Lin-26 related ...    30   5.3  
U41535-5|AAK67252.1|  548|Caenorhabditis elegans Lin-26 related ...    30   5.3  
AJ130960-1|CAA10264.1|  482|Caenorhabditis elegans LIR-2B protei...    30   5.3  
AJ130959-1|CAA10263.1|  548|Caenorhabditis elegans LIR-2A protei...    30   5.3  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    29   9.2  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  182 bits (444), Expect = 5e-46
 Identities = 89/168 (52%), Positives = 110/168 (65%)
 Frame = +2

Query: 143 ARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQT 322
           ARPLV+VY EK E    + + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQ-SQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 323 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWXXXXXXXXXXXXXX 502
           SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +              
Sbjct: 62  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRY 121

Query: 503 XXXXXXXXXXXXXLVQARGHIVEKIPELPLVVSDNVXGXHKTKQAXIF 646
                        L+QARGH+++++ E+PLVVSD V    KTK+A +F
Sbjct: 122 AVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVF 169


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 228 GALNTNGRGSEAPATTSLFSEYT-DTKGRATDRLISLYQ 115
           G LN NGR S A   T  F++YT  T  R TD   SL Q
Sbjct: 9   GGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSLSQ 47


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 228 GALNTNGRGSEAPATTSLFSEYT-DTKGRATDRLISLYQ 115
           G LN NGR S A   T  F++YT  T  R TD   SL Q
Sbjct: 9   GGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSLSQ 47


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +2

Query: 275 NARQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 445
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 446 PTKP 457
             KP
Sbjct: 197 APKP 200


>U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death
           abnormality protein 6 protein.
          Length = 492

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 240 SGLMGALNTNGRGSEAPATTSLFSEYTDTKGR 145
           SG++G  N NG GS +P+T++   +Y    GR
Sbjct: 14  SGIVGGNNINGEGSSSPSTSAPQVKYRGGTGR 45


>AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate
           adaptor protein CED-6 protein.
          Length = 492

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 240 SGLMGALNTNGRGSEAPATTSLFSEYTDTKGR 145
           SG++G  N NG GS +P+T++   +Y    GR
Sbjct: 14  SGIVGGNNINGEGSSSPSTSAPQVKYRGGTGR 45


>U41535-6|AAK67248.1|  482|Caenorhabditis elegans Lin-26 related
           protein 2, isoform b protein.
          Length = 482

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 122 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVS 265
           SE+ +S++ P+ S  S+ SE  A  SLP     +AP+   L++D   S
Sbjct: 108 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 155


>U41535-5|AAK67252.1|  548|Caenorhabditis elegans Lin-26 related
           protein 2, isoform a protein.
          Length = 548

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 122 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVS 265
           SE+ +S++ P+ S  S+ SE  A  SLP     +AP+   L++D   S
Sbjct: 174 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 221


>AJ130960-1|CAA10264.1|  482|Caenorhabditis elegans LIR-2B protein
           protein.
          Length = 482

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 122 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVS 265
           SE+ +S++ P+ S  S+ SE  A  SLP     +AP+   L++D   S
Sbjct: 108 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 155


>AJ130959-1|CAA10263.1|  548|Caenorhabditis elegans LIR-2A protein
           protein.
          Length = 548

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 122 SEMSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVS 265
           SE+ +S++ P+ S  S+ SE  A  SLP     +AP+   L++D   S
Sbjct: 174 SEIPISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTS 221


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +2

Query: 128 MSLSVARPLVSVYSEKSEVVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYCVS 301
           MS++V  P +S       VV+     + F++  P    ++ D H+   + A    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,903,142
Number of Sequences: 27780
Number of extensions: 343239
Number of successful extensions: 888
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4639367406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)