Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F02_e14_12.seq
         (1593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442...    30   4.4  

>02_02_0421 -
           10042184-10042197,10042442-10042822,10044158-10044261,
           10044634-10044734,10044806-10045147,10045981-10046158,
           10047696-10047776,10049190-10049449
          Length = 486

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -1

Query: 231 KPSRIDKKWRPIGIQFHLF*SKTFIKNLSLGVFFLIYCK 115
           + +R+ K W  + +++ LF    +I++LSL +  L+YC+
Sbjct: 79  RATRLVKSWNGVMLKYVLFKRVGYIESLSLMIRMLLYCE 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,354,497
Number of Sequences: 37544
Number of extensions: 528486
Number of successful extensions: 1063
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5162938060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)