Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F02_e14_12.seq
         (1593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03410.1 68416.m00339 calmodulin-related protein, putative si...    29   6.4  
At5g18750.1 68418.m02226 DNAJ heat shock N-terminal domain-conta...    29   8.5  

>At3g03410.1 68416.m00339 calmodulin-related protein, putative
           similar to calmodulin-related protein 2, touch-induced
           SP:P25070 from [Arabidopsis thaliana]
          Length = 131

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 455 TGCINRFLKHIFLFCDI 505
           T CI + LK +F+FCD+
Sbjct: 60  TSCIEKMLKEVFVFCDV 76


>At5g18750.1 68418.m02226 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 884

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 634 QNTLSLCSRNTSICIWREVFKLNGSRYPAQALLENTAVLWFPHD 503
           ++ L  C       +WR VFKL  +R   ++LLEN  + W  HD
Sbjct: 688 EDGLPKCYAKIQQIVWRPVFKLQINRLEPKSLLEN-VIQW--HD 728


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,068,312
Number of Sequences: 28952
Number of extensions: 399687
Number of successful extensions: 754
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4298812032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)