Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F01_e6_11.seq
         (1607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    238   8e-63
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   230   3e-60
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304...    30   5.9  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  238 bits (583), Expect = 8e-63
 Identities = 111/189 (58%), Positives = 148/189 (78%), Gaps = 1/189 (0%)
 Frame = -3

Query: 672 MKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RQLKVEKWF 496
           MK I+A++ ++IPE +TV V +++VTV+GPRG L RNFKHL +D +++   R+L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 495 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEK 316
           G+++ +AA+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  NT IEIRNFLGEK
Sbjct: 61  GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120

Query: 315 YIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYV 136
            +R+V M  GVT++ S K KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YV
Sbjct: 121 KVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 180

Query: 135 SEKTTVVAD 109
           S+K T+  D
Sbjct: 181 SDKGTITED 189


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  230 bits (562), Expect = 3e-60
 Identities = 107/182 (58%), Positives = 141/182 (77%), Gaps = 3/182 (1%)
 Frame = -3

Query: 645 VKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RQLKVEKWFGSKKELA 475
           ++IP  +TVHV +++VTV+GPRG L RNFKHL +D +++     R+L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 474 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYIRRVKM 295
           A+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  NT IEIRNFLGEK +R+V M
Sbjct: 61  AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 120

Query: 294 APGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 115
             GVT++ S K KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YVS+K T+ 
Sbjct: 121 LEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTIT 180

Query: 114 AD 109
            D
Sbjct: 181 ED 182


>10_08_0943 +
           21728294-21728675,21728767-21728840,21729469-21730443,
           21730617-21730683,21730765-21730827,21731001-21731064,
           21731162-21731255,21731352-21731435,21731523-21731612,
           21731708-21731735,21732117-21732596,21732679-21732740,
           21732820-21732929,21733014-21733101,21733228-21733557,
           21733782-21733904
          Length = 1037

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 316 LFTKEVTDLNNCVSLSGDTVDRE 384
           L  KEVTD++ C+++   TVDRE
Sbjct: 219 LVPKEVTDMSGCINIFHATVDRE 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,526,520
Number of Sequences: 37544
Number of extensions: 629463
Number of successful extensions: 1060
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5220948600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)