Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F01_e6_11.seq
         (1607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)        177   2e-44
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   1e-08
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               33   0.84 
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 31   3.4  
SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07)                  31   3.4  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.9  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score =  177 bits (431), Expect = 2e-44
 Identities = 78/137 (56%), Positives = 106/137 (77%)
 Frame = -3

Query: 699 GSCVKQSPNMKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPR 520
           GSC+     MK I+A++ V IP+++ V VKSR+VTV GPRG LKRNF+HL +++  V   
Sbjct: 548 GSCLSCIVAMKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKD 607

Query: 519 QLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIE 340
           +++V+ WF S+KELA V+T+ +H+ENMIKGV  G++YKMRAVYAHFPIN    E  T++E
Sbjct: 608 KVRVDVWFASRKELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVE 667

Query: 339 IRNFLGEKYIRRVKMAP 289
           +RNFLGEKY+RRV+M P
Sbjct: 668 VRNFLGEKYVRRVRMRP 684


>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 27/30 (90%), Positives = 29/30 (96%)
 Frame = -3

Query: 204 ALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 115
           ALIQQST VKNKDIRKFLDG+YVSEKTT+V
Sbjct: 2   ALIQQSTKVKNKDIRKFLDGVYVSEKTTIV 31


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 32.7 bits (71), Expect = 0.84
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = -3

Query: 357 GNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ--KDELIIEGNSLEDVSSSAALIQQST 184
           G  ++ +++ LG++    +      T +       K+EL    +SLE+VS   A +Q S 
Sbjct: 196 GREVVRLKDELGKQASNELSFIAKTTELEDQLVLLKEELNSRVSSLENVSKQLAELQSSA 255

Query: 183 TVKNKDIRKFLDGLYVSEK 127
             K+++I      L V+EK
Sbjct: 256 LTKDEEISSLTKRLQVTEK 274


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -3

Query: 318 KYIRRVKMAPGVTVVNSPKQKDELIIE-GNSLEDVSSSAALIQQSTTVKNKDIRKFLDGL 142
           K   R ++A G+   ++P Q + LI   G   EDV S+ +L +  +      + KF DG 
Sbjct: 25  KRFERFRIASGLDKKDAPSQINALIYTMGERAEDVLSTFSLTEAESKDYKVVVEKF-DGH 83

Query: 141 YVSEKTTV 118
           +V ++ T+
Sbjct: 84  FVKKRNTI 91


>SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07)
          Length = 391

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 21/46 (45%), Positives = 24/46 (52%)
 Frame = -2

Query: 703 SRLLCQTKP*YEANSCKPKGEDS*ESHRPCEIAFGDSERSSRSSKT 566
           +R LC  KP   A     K EDS ES +PC +  G S R  R SKT
Sbjct: 8   TRKLCFRKPGQNAGE---KTEDSSESEQPCRMQHG-SLRVKRKSKT 49


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
 Frame = -3

Query: 570  KRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQY-KMRAV 394
            KR   H+   +  +N ++   +K    K+ LAA + V +   N+ KGVT+G    K R V
Sbjct: 924  KRKLTHV---VDGINTKKELRKKQEDMKRALAAAKVVKTERVNVAKGVTQGMPVTKGRVV 980

Query: 393  YAHFPI--NCVTTEGNTIIE-IRNFLGEKYIRRVKMAPGVTVVNS-PKQKDELIIEG 235
                PI    V T+G  + + +    G    + + + PG  V    P  +  ++ +G
Sbjct: 981  TQGMPITPGRVVTQGKVVTQGMPVTPGRVVTQGIPVTPGRIVTQGIPVTQGRVVTQG 1037


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,864,279
Number of Sequences: 59808
Number of extensions: 700138
Number of successful extensions: 1346
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 16,821,457
effective HSP length: 86
effective length of database: 11,677,969
effective search space used: 5243408081
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)