Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F01_e6_11.seq
         (1607 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   8.0  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 19/98 (19%), Positives = 39/98 (39%)
 Frame = -3

Query: 489  KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYI 310
            + EL    T    +  M++ + K     +  +  H  +  V  +   I++IRN+LG+  +
Sbjct: 947  RDELIRYSTALRDLTQMMRDIRKSRFSHLHKLTTHMALR-VKHKFTNIMQIRNYLGKLRV 1005

Query: 309  RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALI 196
             + +    ++VV         +    SL     S A +
Sbjct: 1006 NQEECRLSLSVVPRDANVQNAVSTTKSLSGGERSYATV 1043


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,254,702
Number of Sequences: 2352
Number of extensions: 22868
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 68
effective length of database: 404,043
effective search space used: 188688081
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)