Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F01_e6_11.seq
         (1607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          26   0.79 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   4.2  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   7.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   7.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   7.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   7.4  

>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 26.2 bits (55), Expect = 0.79
 Identities = 22/74 (29%), Positives = 27/74 (36%)
 Frame = -2

Query: 643 EDS*ESHRPCEIAFGDSERSSRSSKTKLQTLGC*HSHG*SSPVESGEMVRF*KRTSCC*D 464
           E S    + C+  +  S  S RS     Q     HS    S  E G   R     SC  D
Sbjct: 198 EKSENETKTCK-KYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDGNSYRNDGERSCSRD 256

Query: 463 SMLSCRKHDQRCDQ 422
                +K D+R DQ
Sbjct: 257 RSREYKKKDRRYDQ 270


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +1

Query: 496 EPFLHFQLARINHANVNSQVFEVSF*NSARTFHCHQTRFHMDGETLRNLHLL--VCNYLL 669
           E F + +LA I   +    +F          F      F++  E  +NL+L   V  YL+
Sbjct: 51  EVFRYLELAMIRWKDTEIGLFLHEELRRTEAFEV-DLEFYLGKEWKKNLNLRDSVTKYLI 109

Query: 670 HIRALFDT 693
           H++ + DT
Sbjct: 110 HLKEIEDT 117


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 21/74 (28%), Positives = 26/74 (35%)
 Frame = -2

Query: 643 EDS*ESHRPCEIAFGDSERSSRSSKTKLQTLGC*HSHG*SSPVESGEMVRF*KRTSCC*D 464
           E S    + C+  +  S  S RS     Q     HS    S  E     R     SC  D
Sbjct: 198 EKSENETKTCK-KYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRD 256

Query: 463 SMLSCRKHDQRCDQ 422
                +K D+R DQ
Sbjct: 257 RSREYKKKDRRYDQ 270


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 21/74 (28%), Positives = 26/74 (35%)
 Frame = -2

Query: 643 EDS*ESHRPCEIAFGDSERSSRSSKTKLQTLGC*HSHG*SSPVESGEMVRF*KRTSCC*D 464
           E S    + C+  +  S  S RS     Q     HS    S  E     R     SC  D
Sbjct: 198 EKSENETKTCK-KYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRD 256

Query: 463 SMLSCRKHDQRCDQ 422
                +K D+R DQ
Sbjct: 257 RSREYKKKDRRYDQ 270


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 21/74 (28%), Positives = 26/74 (35%)
 Frame = -2

Query: 643 EDS*ESHRPCEIAFGDSERSSRSSKTKLQTLGC*HSHG*SSPVESGEMVRF*KRTSCC*D 464
           E S    + C+  +  S  S RS     Q     HS    S  E     R     SC  D
Sbjct: 198 EKSENETKTCK-KYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRD 256

Query: 463 SMLSCRKHDQRCDQ 422
                +K D+R DQ
Sbjct: 257 RSREYKKKDRRYDQ 270


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 21/74 (28%), Positives = 26/74 (35%)
 Frame = -2

Query: 643 EDS*ESHRPCEIAFGDSERSSRSSKTKLQTLGC*HSHG*SSPVESGEMVRF*KRTSCC*D 464
           E S    + C+  +  S  S RS     Q     HS    S  E     R     SC  D
Sbjct: 198 EKSENETKTCK-KYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRD 256

Query: 463 SMLSCRKHDQRCDQ 422
                +K D+R DQ
Sbjct: 257 RSREYKKKDRRYDQ 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 344,012
Number of Sequences: 438
Number of extensions: 7074
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 56702250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)