Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_F01_e6_11.seq
         (1607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   218   1e-56
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   218   1e-56
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   216   4e-56
At1g05190.1 68414.m00523 ribosomal protein L6 family protein Sim...    39   0.011
At3g58060.1 68416.m06472 cation efflux family protein / metal to...    31   2.8  
At4g19450.1 68417.m02861 nodulin-related weak similarity to nodu...    30   3.7  
At1g76660.1 68414.m08920 expressed protein                             30   4.9  
At5g45275.1 68418.m05557 expressed protein Requires functional a...    29   6.5  

>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  218 bits (532), Expect = 1e-56
 Identities = 101/194 (52%), Positives = 144/194 (74%), Gaps = 5/194 (2%)
 Frame = -3

Query: 672 MKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RQLKV 508
           MK I++++ + IP+S+T+ V ++++ V+GPRG L R+FKHL +D +++       ++LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 507 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNF 328
           + WFG++K  A++RT  SHV+N+I GVT+GF+YKMR VYAHFPIN         IEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 327 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLD 148
           LGEK +R+V+M  GVT+V S K KDE++++GN +E VS S ALI Q   VK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 147 GLYVSEKTTVVADE 106
           G+YVSEK+ +V +E
Sbjct: 181 GIYVSEKSKIVEEE 194


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  218 bits (532), Expect = 1e-56
 Identities = 101/194 (52%), Positives = 144/194 (74%), Gaps = 5/194 (2%)
 Frame = -3

Query: 672 MKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RQLKV 508
           MK I++++ + IP+S+T+ V ++++ V+GPRG L R+FKHL +D +++       ++LK+
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 507 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNF 328
           + WFG++K  A++RT  SHV+N+I GVT+GF+YKMR VYAHFPIN         IEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 327 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLD 148
           LGEK +R+V+M  GVT+V S K KDE++++GN +E VS S ALI Q   VK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 147 GLYVSEKTTVVADE 106
           G+YVSEK+ +V +E
Sbjct: 181 GIYVSEKSKIVEEE 194


>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  216 bits (527), Expect = 4e-56
 Identities = 102/194 (52%), Positives = 139/194 (71%), Gaps = 5/194 (2%)
 Frame = -3

Query: 672 MKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RQLKV 508
           MK I++++ + IP+ + + V ++++ V+GPRG L R+FKHL +D +++       RQLK+
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 507 EKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNF 328
           + WFGS+K  A++RT  SHV+N+I GVT+GF Y+MR VYAHFPIN      N  IEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 327 LGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLD 148
           LGEK +R+V+M  GV +V S K KDE+I+EGN +E VS S ALI Q   VK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 147 GLYVSEKTTVVADE 106
           G+YVSEK  +  +E
Sbjct: 181 GIYVSEKGKIAVEE 194


>At1g05190.1 68414.m00523 ribosomal protein L6 family protein
           Similar to Mycobacterium RlpF (gb|Z84395). ESTs
           gb|T75785,gb|R30580,gb|T04698 come from this gene
          Length = 223

 Score = 38.7 bits (86), Expect = 0.011
 Identities = 21/86 (24%), Positives = 45/86 (52%)
 Frame = -3

Query: 660 VANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGSKKE 481
           +  Q + +P ++T+ ++ + + VKGP G L   +    V++       L+V+K   +++ 
Sbjct: 46  IGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRA 104

Query: 480 LAAVRTVCSHVENMIKGVTKGFQYKM 403
                   +  +NM+ GV+KGF+ K+
Sbjct: 105 NQMHGLFRTLTDNMVVGVSKGFEKKL 130


>At3g58060.1 68416.m06472 cation efflux family protein / metal
           tolerance protein, putative (MTPc3) member of the cation
           diffusion facilitator (CDF) family, or cation efflux
           (CE) family, PMID:11500563
          Length = 411

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 334 TDLNNCVSLSGDTVDREMSVHCTHLVLESLGHTFDHVFDMRAY 462
           T + N VSL G +   E+    T+LV+   G    HV  +RAY
Sbjct: 302 TVMENAVSLIGQSAPPEVLQKLTYLVMRQGGDNIKHVDTVRAY 344


>At4g19450.1 68417.m02861 nodulin-related weak similarity to
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 572

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 629 LSGIFTFWFATICFILGLCLTQEPGKRGYDSQLT 730
           L+G+   WF T+CF+  LC++  P  R     LT
Sbjct: 110 LAGLSICWFNTVCFV--LCISNFPANRSLALSLT 141


>At1g76660.1 68414.m08920 expressed protein 
          Length = 431

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +1

Query: 436 DHVFDMRAYCPNSS*FFFRTEPFLHFQLARINHANVNSQVFEVSF*NSARTF--HCHQTR 609
           D  F+  AY P+      R E  L  Q +  + A+++SQV +     S+ ++  H  + R
Sbjct: 323 DGSFNTSAYSPSDGQKLLRREANLLSQTSPKSEADLDSQVVDFQSPKSSNSYKDHKQRNR 382

Query: 610 FHMDGETL 633
            H D E L
Sbjct: 383 IHADEEAL 390


>At5g45275.1 68418.m05557 expressed protein Requires functional
           assignment.
          Length = 570

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 629 LSGIFTFWFATICFILGLCLTQEPGKRGYDSQLT 730
           L+G+   WF T+CF+  LC+   P  R     LT
Sbjct: 110 LAGLSICWFNTVCFV--LCIRNFPANRSLALSLT 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,506,118
Number of Sequences: 28952
Number of extensions: 494841
Number of successful extensions: 948
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4347004992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)