Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E12_e93_10.seq
         (1532 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4FP45 Cluster: Putative uncharacterized protein; n=1; ...    39   0.30 

>UniRef50_A4FP45 Cluster: Putative uncharacterized protein; n=1;
            Saccharopolyspora erythraea NRRL 2338|Rep: Putative
            uncharacterized protein - Saccharopolyspora erythraea
            (strain NRRL 23338)
          Length = 904

 Score = 39.1 bits (87), Expect = 0.30
 Identities = 26/76 (34%), Positives = 33/76 (43%)
 Frame = +2

Query: 1262 GGXXAXXAXGGPKXQXRPXGPXXGGAGNXRRAXPXXXPKGXAGXXXXRANXPXXGXXRPP 1441
            GG       GG + +  P GP  G AG  R+  P   P G AG    +   P  G  RPP
Sbjct: 727  GGPAQQGPAGGAERRPGPGGP--GMAGPPRQGPPI--PPGAAGGRPPQGGGPEQG--RPP 780

Query: 1442 XXXGKRXRPRXXXPPL 1489
               G++ +P    PPL
Sbjct: 781  QGAGQQIQPLGGEPPL 796


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,101,191,821
Number of Sequences: 1657284
Number of extensions: 18506165
Number of successful extensions: 28904
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 26021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28613
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 163731466850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)