Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_E12_e93_10.seq
(1532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1113 - 10292781-10293299 34 0.34
12_01_0313 + 2388488-2388560,2389285-2389462,2390221-2390331,239... 32 1.4
05_06_0078 - 25412770-25413852 32 1.4
05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419 31 3.2
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 31 3.2
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 30 4.2
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 30 4.2
08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622... 30 4.2
06_03_1326 - 29355467-29355817 30 5.6
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43... 30 5.6
>07_01_1113 - 10292781-10293299
Length = 172
Score = 33.9 bits (74), Expect = 0.34
Identities = 21/89 (23%), Positives = 28/89 (31%)
Frame = +1
Query: 1219 PLXGXRXLKRXANXWRRGGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQGGGRKXX 1398
P G +R RRGG G A GGGG+ G P +
Sbjct: 32 PADGAMRERRSGGRRRRGGGGDGDGDDD---AGAREQGGGGDGGVGAGELSPSSPRAQPR 88
Query: 1399 TXGELSXXXGXXPPRNXXQTXTPXXXKXP 1485
+ + PPR+ T P + P
Sbjct: 89 SCSSVDAATKGNPPRSARTTSAPGSLRLP 117
>12_01_0313 +
2388488-2388560,2389285-2389462,2390221-2390331,
2391280-2391362,2391826-2392027,2392078-2392101,
2392234-2392408,2392482-2392683,2393897-2394036
Length = 395
Score = 31.9 bits (69), Expect = 1.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 759 IFKLXHHFKLNVLQQHSADSWVPRIY 836
I K+ HH+ V ++ D W+PR+Y
Sbjct: 301 IRKIYHHYNFTVEMKNDKDCWIPRVY 326
>05_06_0078 - 25412770-25413852
Length = 360
Score = 31.9 bits (69), Expect = 1.4
Identities = 19/59 (32%), Positives = 21/59 (35%)
Frame = +1
Query: 1270 GGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQGGGRKXXTXGELSXXXGXXPPRN 1446
G G GG + GGGG AG GGGR T G G PR+
Sbjct: 264 GITGGGGGGDGVGRGATGGAGGGGGDAAGGEGGGAAGGGRDGITGG--GGGGGSGAPRD 320
>05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419
Length = 528
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +1
Query: 1261 WRRGGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQGGGRKXXT 1401
W+ G GG K+ + G GE PA A GGG + T
Sbjct: 48 WKAPKSGGGGGGSPTAKSPLSKGAGNGEPPAPPAAAAGGGGGAEGET 94
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 30.7 bits (66), Expect = 3.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 740 NVCYPNXYLFTKCYLISITGIWVFKCMDETC 648
N C+ + LF KC++ + +W+ K +D C
Sbjct: 155 NYCFQSMLLFDKCFVPNSFALWITKQVDVNC 185
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 30.3 bits (65), Expect = 4.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 740 NVCYPNXYLFTKCYLISITGIWVFKCMDETC 648
N C+ + LF KC++ + +W+ K +D C
Sbjct: 152 NSCFQSMLLFDKCFVPNSFALWIAKQVDVNC 182
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 30.3 bits (65), Expect = 4.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 740 NVCYPNXYLFTKCYLISITGIWVFKCMDETC 648
N C+ + LF KC++ + +W+ K +D C
Sbjct: 177 NSCFQSMLLFDKCFVPNSFALWIAKQVDVNC 207
>08_01_0704 +
6219530-6219609,6221595-6222243,6222339-6222437,
6222521-6222616,6222750-6222848,6222929-6223027,
6223811-6223882,6224508-6224597,6225173-6227329
Length = 1146
Score = 30.3 bits (65), Expect = 4.2
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -1
Query: 602 CRNNRISSLYQVSTDLFYFN--CSNTNKNLTAGKQLEAALKARLVLNRLRNNCIKINN*T 429
C R S L + S + Y + CS T L K +K +N L ++C+K ++
Sbjct: 208 CSRTR-SGLVRESIQMDYSDSSCSRTRSGLVRRKPFMVQVKDEAAMNGLSDDCLKEDSPG 266
Query: 428 KR*PYHH*NL 399
K P H NL
Sbjct: 267 KNEPNHKSNL 276
>06_03_1326 - 29355467-29355817
Length = 116
Score = 29.9 bits (64), Expect = 5.6
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +1
Query: 1270 GGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQGGG 1386
GG G GG K GGGG G +GGG
Sbjct: 10 GGGKGGGGGGGGGKGGGGGSGGGGRSGGGGGGGGGKGGG 48
>06_01_0047 -
429838-429960,430413-430508,430589-430596,431088-431141,
431226-431274,431368-431466,431560-431639,431926-431989,
432082-432255,432342-432965,433046-433189,433262-433372,
433442-433498,433664-433798
Length = 605
Score = 29.9 bits (64), Expect = 5.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 740 NVCYPNXYLFTKCYLISITGIWVFKCMDETC 648
N C+ + LF KC++ + +W+ K +D C
Sbjct: 187 NSCFRSMLLFDKCFVPNSFALWIAKQVDVNC 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,279,417
Number of Sequences: 37544
Number of extensions: 546922
Number of successful extensions: 1600
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4930895900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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