Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_E12_e93_10.seq
(1532 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-1244|AAS64915.1| 253|Drosophila melanogaster CG13214-P... 33 0.79
AE013599-1243|AAF58688.1| 610|Drosophila melanogaster CG13214-P... 33 0.79
U13178-1|AAA86955.1| 404|Drosophila melanogaster RNA binding pr... 33 1.0
M15765-1|AAA70425.1| 365|Drosophila melanogaster unknown protei... 33 1.0
L37083-1|AAC41563.1| 404|Drosophila melanogaster RNA binding pr... 33 1.0
BT004875-1|AAO45231.1| 399|Drosophila melanogaster LD22761p pro... 33 1.0
AE014298-2351|AAN09389.1| 399|Drosophila melanogaster CG3606-PB... 33 1.0
AE014298-2350|AAF48578.2| 399|Drosophila melanogaster CG3606-PA... 33 1.0
BT015282-1|AAT94511.1| 1250|Drosophila melanogaster LD04601p pro... 30 7.4
AF255733-1|AAF71288.1| 1250|Drosophila melanogaster DNA topoisom... 30 7.4
AE014134-3114|AAF53813.2| 1250|Drosophila melanogaster CG10123-P... 30 7.4
>AE013599-1244|AAS64915.1| 253|Drosophila melanogaster CG13214-PB,
isoform B protein.
Length = 253
Score = 33.5 bits (73), Expect = 0.79
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = +1
Query: 1270 GGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQGGG 1386
GG G GG A GGGG PAG P GGG
Sbjct: 44 GGGFGGGGGFGGGGAGGGYGGGGGGGPAGGFGGGPGGGG 82
>AE013599-1243|AAF58688.1| 610|Drosophila melanogaster CG13214-PA,
isoform A protein.
Length = 610
Score = 33.5 bits (73), Expect = 0.79
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = +1
Query: 1270 GGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQGGG 1386
GG G GG A GGGG PAG P GGG
Sbjct: 44 GGGFGGGGGFGGGGAGGGYGGGGGGGPAGGFGGGPGGGG 82
>U13178-1|AAA86955.1| 404|Drosophila melanogaster RNA binding protein
protein.
Length = 404
Score = 33.1 bits (72), Expect = 1.0
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +1
Query: 1240 LKRXANXWRRGGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQGGG 1386
L + N W +GG G GG GGGG G +GGG
Sbjct: 202 LAQRQNNWNKGGGGGGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGGG 250
>M15765-1|AAA70425.1| 365|Drosophila melanogaster unknown protein
protein.
Length = 365
Score = 33.1 bits (72), Expect = 1.0
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +1
Query: 1240 LKRXANXWRRGGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQGGG 1386
L + N W +GG G GG GGGG G +GGG
Sbjct: 164 LAQRQNNWNKGGGGGGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGGG 212
>L37083-1|AAC41563.1| 404|Drosophila melanogaster RNA binding protein
protein.
Length = 404
Score = 33.1 bits (72), Expect = 1.0
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +1
Query: 1240 LKRXANXWRRGGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQGGG 1386
L + N W +GG G GG GGGG G +GGG
Sbjct: 202 LAQRQNNWNKGGGGGGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGGG 250
>BT004875-1|AAO45231.1| 399|Drosophila melanogaster LD22761p protein.
Length = 399
Score = 33.1 bits (72), Expect = 1.0
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +1
Query: 1240 LKRXANXWRRGGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQGGG 1386
L + N W +GG G GG GGGG G +GGG
Sbjct: 203 LAQRQNNWNKGGGGGGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGGG 251
>AE014298-2351|AAN09389.1| 399|Drosophila melanogaster CG3606-PB,
isoform B protein.
Length = 399
Score = 33.1 bits (72), Expect = 1.0
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +1
Query: 1240 LKRXANXWRRGGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQGGG 1386
L + N W +GG G GG GGGG G +GGG
Sbjct: 203 LAQRQNNWNKGGGGGGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGGG 251
>AE014298-2350|AAF48578.2| 399|Drosophila melanogaster CG3606-PA,
isoform A protein.
Length = 399
Score = 33.1 bits (72), Expect = 1.0
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +1
Query: 1240 LKRXANXWRRGGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQGGG 1386
L + N W +GG G GG GGGG G +GGG
Sbjct: 203 LAQRQNNWNKGGGGGGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGGG 251
>BT015282-1|AAT94511.1| 1250|Drosophila melanogaster LD04601p protein.
Length = 1250
Score = 30.3 bits (65), Expect = 7.4
Identities = 24/99 (24%), Positives = 27/99 (27%), Gaps = 1/99 (1%)
Frame = +1
Query: 1198 GXDXDPGPLXGXRXLKRXANXWRRGGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQ 1377
G PGP G + W G G G + GGGG G
Sbjct: 772 GGGPGPGPGGGGSGRGAGSGGWSSGPGGGGSGGGGGSGGWGSGTGGGGSGGWGSGTGGGG 831
Query: 1378 -GGGRKXXTXGELSXXXGXXPPRNXXQTXTPXXXKXPXK 1491
GGG+ GE PP T P K
Sbjct: 832 LGGGKGKKPGGESKKSATKKPPNEPKPKKTKEPKAAPNK 870
>AF255733-1|AAF71288.1| 1250|Drosophila melanogaster DNA topoisomerase
III alpha protein.
Length = 1250
Score = 30.3 bits (65), Expect = 7.4
Identities = 24/99 (24%), Positives = 27/99 (27%), Gaps = 1/99 (1%)
Frame = +1
Query: 1198 GXDXDPGPLXGXRXLKRXANXWRRGGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQ 1377
G PGP G + W G G G + GGGG G
Sbjct: 772 GGGPGPGPGGGGSGRGAGSGGWSSGPGGGGSGGGGGSGGWGSGTGGGGSGGWGSGTGGGG 831
Query: 1378 -GGGRKXXTXGELSXXXGXXPPRNXXQTXTPXXXKXPXK 1491
GGG+ GE PP T P K
Sbjct: 832 LGGGKGKKPGGESKKSATKKPPNEPKPKKTKEPKAAPNK 870
>AE014134-3114|AAF53813.2| 1250|Drosophila melanogaster CG10123-PA
protein.
Length = 1250
Score = 30.3 bits (65), Expect = 7.4
Identities = 24/99 (24%), Positives = 27/99 (27%), Gaps = 1/99 (1%)
Frame = +1
Query: 1198 GXDXDPGPLXGXRXLKRXANXWRRGGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQ 1377
G PGP G + W G G G + GGGG G
Sbjct: 772 GGGPGPGPGGGGSGRGAGSGGWSSGPGGGGSGGGGGSGGWGSGTGGGGSGGWGSGTGGGG 831
Query: 1378 -GGGRKXXTXGELSXXXGXXPPRNXXQTXTPXXXKXPXK 1491
GGG+ GE PP T P K
Sbjct: 832 LGGGKGKKPGGESKKSATKKPPNEPKPKKTKEPKAAPNK 870
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,307,678
Number of Sequences: 53049
Number of extensions: 886268
Number of successful extensions: 1480
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 24,988,368
effective HSP length: 88
effective length of database: 20,320,056
effective search space used: 8575063632
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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