Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E12_e93_10.seq
         (1532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    31   2.9  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    31   2.9  

>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical protein
            ZK643.8 protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 14/46 (30%), Positives = 16/46 (34%)
 Frame = +1

Query: 1270 GGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQGGGRKXXTXG 1407
            GG    GG      +     GGGG    G     P GGG    + G
Sbjct: 193  GGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGG 238



 Score = 29.5 bits (63), Expect = 6.6
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = +1

Query: 1270 GGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQGGG 1386
            GG    GG      +     GGGG    G     P GGG
Sbjct: 172  GGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSGGG 210


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical protein
            ZK643.8 protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 14/46 (30%), Positives = 16/46 (34%)
 Frame = +1

Query: 1270 GGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQGGGRKXXTXG 1407
            GG    GG      +     GGGG    G     P GGG    + G
Sbjct: 193  GGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYASAPSGGGGYATSGG 238



 Score = 29.5 bits (63), Expect = 6.6
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = +1

Query: 1270 GGXXGXGGXQXXXKAXXAXXGGGGEXPAGXAXXXPQGGG 1386
            GG    GG      +     GGGG    G     P GGG
Sbjct: 172  GGGSSGGGGYAVAPSGGGGCGGGGSSGGGGYAVAPSGGG 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,344,220
Number of Sequences: 27780
Number of extensions: 495868
Number of successful extensions: 907
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4411031650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)