Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_E11_e85_09.seq
(1515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 152 6e-37
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 146 5e-35
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 142 9e-34
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 36 0.11
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 29 9.6
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 152 bits (369), Expect = 6e-37
Identities = 84/204 (41%), Positives = 108/204 (52%)
Frame = +2
Query: 122 MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHIA 301
+ L +V + GL +L++YL RSY+SGY S+ D+ VF + PAAS +V RWY HI+
Sbjct: 22 ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81
Query: 302 SYTPAERKTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGXXXXXXXXXXXXXXXL 481
+ + T +EG
Sbjct: 82 ALLRSSGVT-AEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE 140
Query: 482 KAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGYG 661
+A A K S K KSS++LDVKPWDDETDM ++E VR ++M+GLLWGASKLVPVGYG
Sbjct: 141 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYG 200
Query: 662 INKLQIMCVIEDDKVSVDLLTEKF 733
I KLQIM I DD VSVD L E +
Sbjct: 201 IKKLQIMMTIVDDLVSVDSLIEDY 224
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 146 bits (353), Expect = 5e-35
Identities = 83/201 (41%), Positives = 106/201 (52%), Gaps = 2/201 (0%)
Frame = +2
Query: 134 DVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHIASYTP 313
D+ TA GL L Q+L+ ++YVSG S+ DIKVF V P A P+ RWY +A+
Sbjct: 7 DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALA 66
Query: 314 AERKTWSEGVSX--XXXXXXXXXXXXXSNXXXXXXXXLFGSGXXXXXXXXXXXXXXXLKA 487
+ + GV+ + L G KA
Sbjct: 67 SRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAADERAASKA 126
Query: 488 YADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGYGIN 667
+ KK KSS++LDVKPWDDETDMK++E VR+++M+GL WGASKLVPVGYGI
Sbjct: 127 SSKKKES-----GKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIK 181
Query: 668 KLQIMCVIEDDKVSVDLLTEK 730
KLQIM I DD VSVD L E+
Sbjct: 182 KLQIMLTIVDDLVSVDSLIEE 202
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 142 bits (343), Expect = 9e-34
Identities = 84/208 (40%), Positives = 109/208 (52%), Gaps = 8/208 (3%)
Frame = +2
Query: 134 DVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHI----- 298
+V + GL +L++YL RSY+SGY S D+ V+ P++S +V RW++HI
Sbjct: 7 NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLR 66
Query: 299 ASYTPAER---KTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGXXXXXXXXXXXX 469
S A+ K S V ++ LFG
Sbjct: 67 LSGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE-- 124
Query: 470 XXXLKAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWGASKLVP 649
+A A K S K KSS++LDVKPWDDETDM ++E VR ++M+GLLWGASKLVP
Sbjct: 125 ----RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVP 180
Query: 650 VGYGINKLQIMCVIEDDKVSVDLLTEKF 733
VGYGI KLQIM I DD VSVD L E +
Sbjct: 181 VGYGIKKLQIMMTIVDDLVSVDSLIEDY 208
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 35.5 bits (78), Expect = 0.11
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Frame = +2
Query: 155 LNELNQYLAERSYV--SGYTPSQADIKVFEQV-------GKVPAASLPHVLRWYSHI 298
L LNQ L+++S + +G+ PS ADI VF + G+ PHVLRW +I
Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 29.1 bits (62), Expect = 9.6
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +2
Query: 146 AQGLNELNQYLAERSYVSGYTPSQADIKVFEQV---GKVPAASL----PHVLRWYSHIAS 304
AQ L+ + +LA Y++G S AD + K P A L PHV W+ I+S
Sbjct: 145 AQVLDVYDAHLAGSRYLAGNRFSLADANHMSYLLFLSKTPMAELVASRPHVKAWWDDISS 204
Query: 305 YTPAERKT 328
PA +KT
Sbjct: 205 -RPAWKKT 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,522,743
Number of Sequences: 37544
Number of extensions: 496077
Number of successful extensions: 915
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4861283252
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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