Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_E11_e85_09.seq
(1515 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.) 200 2e-51
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 1e-07
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05) 53 5e-07
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025) 44 4e-04
SB_44767| Best HMM Match : WD40 (HMM E-Value=0.074) 38 0.021
SB_46058| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.34
SB_53034| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.45
SB_52731| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.60
SB_25896| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.0
SB_16375| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.4
SB_14212| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.4
SB_1689| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.4
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.2
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6) 31 3.2
SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8) 31 3.2
SB_46507| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.2
SB_14784| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.2
SB_8267| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.2
SB_11515| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.7
>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 200 bits (489), Expect = 2e-51
Identities = 102/206 (49%), Positives = 124/206 (60%), Gaps = 3/206 (1%)
Frame = +2
Query: 122 MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHIA 301
M GD+K+ GL+ LN +L ERSY+ GY PSQAD VFE + P ASLPH LRWY+HI
Sbjct: 1 MGFGDLKSQAGLSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIV 60
Query: 302 SYTPAERKTWSEGVSXXXXXXXXXXXXXX---SNXXXXXXXXLFGSGXXXXXXXXXXXXX 472
SY ++ E S ++ LFGS
Sbjct: 61 SYGEGKQNFPGEKKSVESFGPAGAASEQKPAPADDNDDDEIDLFGSDDEEEEKEAARIRQ 120
Query: 473 XXLKAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWGASKLVPV 652
LKAY +KK+KK +IAKS+I+LDVKPWDDETDM EME VR+I+ DGLLWGASKLVP+
Sbjct: 121 ERLKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEMEKLVRSIQADGLLWGASKLVPL 180
Query: 653 GYGINKLQIMCVIEDDKVSVDLLTEK 730
YGI KLQI V+EDDK+S D L E+
Sbjct: 181 AYGIKKLQITVVVEDDKISTDFLEEE 206
Score = 35.5 bits (78), Expect = 0.11
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +1
Query: 727 KIQEFEDFVQSVDIAAFNK 783
+I +FEDFVQSVDIAAFNK
Sbjct: 206 EICKFEDFVQSVDIAAFNK 224
>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 55.2 bits (127), Expect = 1e-07
Identities = 23/35 (65%), Positives = 25/35 (71%)
Frame = +2
Query: 203 YTPSQADIKVFEQVGKVPAASLPHVLRWYSHIASY 307
Y PSQAD VFE + P ASLPH LRWY+HI SY
Sbjct: 2 YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36
>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
Length = 416
Score = 53.2 bits (122), Expect = 5e-07
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +2
Query: 479 LKAYADKKSKKPALIAKSS---IILDVKPWDDETDMKEMEN--QVRTIEMDGLLWGASKL 643
+KA+A K +KPA K +D+ DDE + +E + R E + +KL
Sbjct: 60 IKAFAKKPEEKPAAAKKEDDDDSDIDLFGSDDEEEAEEARQLREKRLAEYNAKK-ATTKL 118
Query: 644 VPVGYGINKLQIMCVIEDDKVSVDLLTEK 730
V + YG+ KLQI CVIED KVS D L +K
Sbjct: 119 VEIAYGLKKLQITCVIEDAKVSTDDLIDK 147
>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
Length = 301
Score = 43.6 bits (98), Expect = 4e-04
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +2
Query: 638 KLVPVGYGINKLQIMCVIEDDKVSVDLLTEK 730
KLV + YG+ KLQI CVIED KVS D L +K
Sbjct: 2 KLVEIAYGLKKLQITCVIEDAKVSTDDLIDK 32
>SB_44767| Best HMM Match : WD40 (HMM E-Value=0.074)
Length = 532
Score = 37.9 bits (84), Expect = 0.021
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +2
Query: 983 LNRLXAHSPFXRWAXSXXPXRXPFP 1057
LNRL AH PF W S P R PFP
Sbjct: 361 LNRLAAHPPFASWRNSERPHRSPFP 385
>SB_46058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 33.9 bits (74), Expect = 0.34
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = +2
Query: 932 PSFXXVXELGKPLXLPXLNRLXAHSPFXRWAXS 1030
PSF V GK L + LNRL AH PF W S
Sbjct: 9 PSFYNVVT-GKTLSVTQLNRLAAHPPFASWRNS 40
>SB_53034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 33.5 bits (73), Expect = 0.45
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = +2
Query: 932 PSFXXVXELGKPLXLPXLNRLXAHSPFXRWAXS 1030
PSF V GK L + LNRL AH PF W S
Sbjct: 7 PSFYNVVT-GKTLGVTQLNRLAAHPPFASWRNS 38
>SB_52731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 33.1 bits (72), Expect = 0.60
Identities = 16/25 (64%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 1057 WEGXSXRXX-AXRPAGKRGMCXKAI 986
WEG S R A PAG+RGMC KAI
Sbjct: 52 WEGRSVRGLFAITPAGERGMCCKAI 76
>SB_25896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 32.3 bits (70), Expect = 1.0
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = +2
Query: 932 PSFXXVXELGKPLXLPXLNRLXAHSPFXRWAXS 1030
PSF V GK L LP L L AH PF W S
Sbjct: 9 PSFYNVVT-GKTLALPNLIALAAHPPFASWRNS 40
>SB_16375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 31.1 bits (67), Expect = 2.4
Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 978 PX*IALXHIPLXPAGRXA-XXRXDXPS 1055
P IAL HIPL PAGR + R D PS
Sbjct: 21 PNLIALQHIPLSPAGRNSEEARTDRPS 47
>SB_14212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 31.1 bits (67), Expect = 2.4
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +2
Query: 932 PSFXXVXELGKPLXLPXLNRLXAHSPFXRWAXS 1030
PSF V GK + LNRL AH PF W S
Sbjct: 9 PSFYNVVT-GKNTGVTQLNRLAAHPPFASWRNS 40
>SB_1689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 31.1 bits (67), Expect = 2.4
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +2
Query: 932 PSFXXVXELGKPLXLPXLNRLXAHSPFXRWAXS 1030
PSF V GK + LNRL AH PF W S
Sbjct: 9 PSFYNVVT-GKNTGVTQLNRLAAHPPFASWRNS 40
>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 30.7 bits (66), Expect = 3.2
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -3
Query: 1030 AXRPAGKRGMCXKAI*XG*XQGF 962
A PAG+RGMC KAI G +GF
Sbjct: 15 AITPAGERGMCCKAIKLGNAKGF 37
>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
Length = 237
Score = 30.7 bits (66), Expect = 3.2
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -3
Query: 1030 AXRPAGKRGMCXKAI*XG*XQGF 962
A PAG+RGMC KAI G +GF
Sbjct: 54 AITPAGERGMCCKAIKLGNARGF 76
>SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)
Length = 142
Score = 30.7 bits (66), Expect = 3.2
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +2
Query: 959 GKPLXLPXLNRLXAHSPFXRWAXS 1030
GK L LNRL AH PF W S
Sbjct: 60 GKTLAYTQLNRLAAHPPFASWRNS 83
>SB_46507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 30.3 bits (65), Expect = 4.2
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 975 YPX*IALXHIPLXPAGRXA-XXRXDXPS 1055
+P IAL HIPL PAG A R D PS
Sbjct: 20 FPLLIALHHIPLSPAGVIAEEARTDRPS 47
>SB_14784| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 30.3 bits (65), Expect = 4.2
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +2
Query: 932 PSFXXVXELGKPLXLPXLNRLXAHSPFXRWAXS 1030
PSF V GK + LNRL AH PF W S
Sbjct: 9 PSFYNVVT-GKNPGVTQLNRLAAHPPFASWRNS 40
>SB_8267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 30.3 bits (65), Expect = 4.2
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +2
Query: 932 PSFXXVXELGKPLXLPXLNRLXAHSPFXRWAXS 1030
PSF V L K + LNRL AH PF W S
Sbjct: 9 PSFYNVM-LAKTPGVTQLNRLAAHPPFASWRNS 40
>SB_11515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 29.5 bits (63), Expect = 7.4
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +2
Query: 932 PSFXXVXELGKPLXLPXLNRLXAHSPFXRWAXS 1030
PSF V P + LNRL AH PF W S
Sbjct: 9 PSFYNVVHWENP-GVTQLNRLAAHPPFASWRNS 40
>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 29.5 bits (63), Expect = 7.4
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -2
Query: 1055 GRAIGAXX-CXSPSGXKGNVPQGDL 984
GRAIGA +P+G KG+V QGDL
Sbjct: 48 GRAIGAGLFAITPAGEKGDVLQGDL 72
>SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 29.1 bits (62), Expect = 9.7
Identities = 16/27 (59%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 978 PX*IALXHIPLXPAGRXA-XXRXDXPS 1055
P IAL HIPL PAG A R D PS
Sbjct: 59 PNLIALQHIPLSPAGVIAEEARTDRPS 85
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,460,709
Number of Sequences: 59808
Number of extensions: 562976
Number of successful extensions: 3489
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3486
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4918128563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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