Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E11_e85_09.seq
         (1515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...   182   8e-46
Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...   126   3e-29
U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,...    29   6.5  
Z66495-5|CAA91272.1|  501|Caenorhabditis elegans Hypothetical pr...    29   8.6  

>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score =  182 bits (442), Expect = 8e-46
 Identities = 97/202 (48%), Positives = 122/202 (60%), Gaps = 1/202 (0%)
 Frame = +2

Query: 128 LGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASL-PHVLRWYSHIAS 304
           + DVK+  GL   N  LAE+++ +G+  S  D ++F  +G  P AS  P+V RWY+++AS
Sbjct: 2   VADVKSPAGLAAFNTTLAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVAS 61

Query: 305 YTPAERKTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGXXXXXXXXXXXXXXXLK 484
           YT AERKTW+                            LFGS                L 
Sbjct: 62  YTDAERKTWASAGGSAPAAAAADGDDFD----------LFGSDDEEEDAEKAKIVEERLA 111

Query: 485 AYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGYGI 664
           AYA+KK+KK   IAKSS+ILDVKPWDDETD+ EME  VR+IEMDGL+WG +KL+P+GYGI
Sbjct: 112 AYAEKKAKKAGPIAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGI 171

Query: 665 NKLQIMCVIEDDKVSVDLLTEK 730
            KLQI+ VIED KVSVD L EK
Sbjct: 172 KKLQIITVIEDLKVSVDDLIEK 193



 Score = 30.7 bits (66), Expect = 2.8
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +1

Query: 736 EFEDFVQSVDIAAFNK 783
           +FED VQSVDI AFNK
Sbjct: 197 DFEDHVQSVDIVAFNK 212


>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score =  126 bits (305), Expect = 3e-29
 Identities = 64/104 (61%), Positives = 73/104 (70%)
 Frame = +2

Query: 419 LFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQV 598
           LFGS                L AYA KK+ K   IAKSS+ILDVKPWDDETD+ EME  V
Sbjct: 140 LFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGEMEKLV 199

Query: 599 RTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK 730
           R+IEMDGL+WG +KL+P+GYGI KLQI+ VIED KVSVD L EK
Sbjct: 200 RSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEK 243



 Score = 30.7 bits (66), Expect = 2.8
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +1

Query: 736 EFEDFVQSVDIAAFNK 783
           +FED VQSVDI AFNK
Sbjct: 247 DFEDHVQSVDIVAFNK 262


>U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,
           short chain protein27 protein.
          Length = 816

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = +2

Query: 533 SIILDVKPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV 712
           SI+L VKP DDE  ++++ NQ     M G LW A++     Y   ++     I    V V
Sbjct: 436 SIMLCVKPADDEI-VQKIRNQ-----MSGALWSAAQFAVTSYVCVRVLKFLYIMCKSVLV 489

Query: 713 DLLTEK 730
             +T K
Sbjct: 490 HFITPK 495


>Z66495-5|CAA91272.1|  501|Caenorhabditis elegans Hypothetical
           protein C36A4.6 protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 152 GLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPA 259
           G+N+LNQ L + +Y +G+  +++ I      GK+ A
Sbjct: 117 GMNQLNQSLLQNTYATGWKHTRSAIAPIFSTGKMKA 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,129,538
Number of Sequences: 27780
Number of extensions: 429066
Number of successful extensions: 974
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4348758262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)