Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E10_e77_10.seq
         (1509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    28   2.9  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   6.7  

>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 242 NFR*KKTS*ENHSMVVGHFLMMTAWVATTLKFENLLPNT 358
           NF+  +T  EN +M +    +++A       FEN LPNT
Sbjct: 308 NFQRAQTKIENDNMPLNRPYVLSATARNESSFENTLPNT 346


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +3

Query: 1389 PXGPXEXXGPPPFGXXPAXXXPKXRPXXPP 1478
            P  P E   PPP         P  +P  PP
Sbjct: 412  PARPTESPPPPPISSSSTTPRPDDKPSLPP 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,859,704
Number of Sequences: 5004
Number of extensions: 90064
Number of successful extensions: 170
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 844406124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)