Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E10_e77_10.seq
         (1509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056...    29   9.6  
06_03_1105 - 27634787-27636025                                         29   9.6  

>07_03_1710 - 28903614-28903673,28904982-28905146,28905453-28905638,
            28905784-28905927,28906281-28906460,28906559-28907215
          Length = 463

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 1398 PXEXXGPPPFGXXPAXXXPKXRPXXPPP 1481
            P     PPP    PA   P+ RP  PPP
Sbjct: 58   PKPSPTPPPASPPPAPTPPQTRPPSPPP 85


>06_03_1105 - 27634787-27636025
          Length = 412

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 858 NPEVHKVRLXASTHERPCSCSGDARSGRVPXQXR 959
           +P   ++RL  S+H    S S  +R+GR P + R
Sbjct: 262 DPNPPRIRLVRSSHRHSTSSSSSSRAGRSPARRR 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,009,003
Number of Sequences: 37544
Number of extensions: 658178
Number of successful extensions: 1473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4838079036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)