Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E10_e77_10.seq
         (1509 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58468| Best HMM Match : rve (HMM E-Value=1.2e-11)                   31   2.4  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            29   9.7  

>SB_58468| Best HMM Match : rve (HMM E-Value=1.2e-11)
          Length = 257

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 695 SLTKLLLSHQYSSSVYLENKNDNEYIRKL 781
           +L++ L SHQY+  + LEN+   E++++L
Sbjct: 103 TLSERLYSHQYAQEMLLENERSREWVKRL 131


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 15/75 (20%), Positives = 38/75 (50%)
 Frame = +2

Query: 521 TKSLVLYYHHWDSDTEVDVCEHHFMSYETEI*LLVLRFTVINKLSSINLNAVSWRQPGSL 700
           + S+++ +HH  S + + +  HH  S  +   ++++     +  SS ++  +    P S 
Sbjct: 56  SSSIIIIHHHHPSSSSIIIIHHHHPSSSS---IIIIHH---HHPSSSSIIIIHHHHPSSS 109

Query: 701 TKLLLSHQYSSSVYL 745
           + +++ H  SSS+ +
Sbjct: 110 SIIIIHHHPSSSIII 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,731,659
Number of Sequences: 59808
Number of extensions: 716974
Number of successful extensions: 1468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4894653009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)