Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E10_e77_10.seq
         (1509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022968-4|AAB69886.2|  458|Caenorhabditis elegans Hypothetical ...    30   3.7  
AF022968-3|AAV28363.1|  482|Caenorhabditis elegans Hypothetical ...    30   3.7  

>AF022968-4|AAB69886.2|  458|Caenorhabditis elegans Hypothetical
           protein C10F3.4a protein.
          Length = 458

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 87  FSHLRVSLKSKMRDH*VLHLVNCDDGPVSS 176
           F+HLR +  +K+ DH +L  + CD  P+S+
Sbjct: 132 FNHLRFNF-AKLHDHEILFYLKCDTDPISN 160


>AF022968-3|AAV28363.1|  482|Caenorhabditis elegans Hypothetical
           protein C10F3.4b protein.
          Length = 482

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 87  FSHLRVSLKSKMRDH*VLHLVNCDDGPVSS 176
           F+HLR +  +K+ DH +L  + CD  P+S+
Sbjct: 156 FNHLRFNF-AKLHDHEILFYLKCDTDPISN 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,018,907
Number of Sequences: 27780
Number of extensions: 550652
Number of successful extensions: 1138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4349991404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)