Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E10_e77_10.seq
         (1509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    27   0.42 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   1.3  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 0.42
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +2

Query: 215 HLSNSKIGLNFR*KKTS*ENHSMVVGHFLMMTAWVATTLKFENLLPNTNRC 367
           H +  +I        T  ENH   +G+   +  WV   LK ++L    N C
Sbjct: 83  HSTTREIAEKLHVSHTCIENHLKQLGYVQKLDTWVPHELKEKHLTQRINSC 133


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 75  HEXLFSHLRVSLKSKMRDH*VLHLVNCDDGPVSSAAGFRVNRRWFDP 215
           H+ L +HLR +L   +    +L L + D+  +     F + ++W+DP
Sbjct: 126 HQHLRTHLRGTLTVNVSVL-LLSLASPDESSLKYEVEFLLQQQWYDP 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 355,673
Number of Sequences: 438
Number of extensions: 7269
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52754625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)