Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E08_e61_10.seq
         (1517 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L05093-1|AAC18781.1|  176|Homo sapiens ribosomal protein L18a pr...    35   0.68 
BC071920-1|AAH71920.1|  176|Homo sapiens ribosomal protein L18a ...    35   0.68 
BC066319-1|AAH66319.1|  176|Homo sapiens ribosomal protein L18a ...    35   0.68 
BC007512-1|AAH07512.1|  176|Homo sapiens ribosomal protein L18a ...    35   0.68 
AK222647-1|BAD96367.1|  176|Homo sapiens ribosomal protein L18a ...    35   0.68 
AC005796-1|AAC62828.1|  176|Homo sapiens ribosomal protein L18a ...    35   0.68 
AB007175-1|BAA28596.1|   66|Homo sapiens ribosomal protein L18a ...    35   0.68 
X80822-1|CAA56788.1|  140|Homo sapiens protein ( H.sapiens mRNA ...    33   2.1  

>L05093-1|AAC18781.1|  176|Homo sapiens ribosomal protein L18a
           protein.
          Length = 176

 Score = 35.1 bits (77), Expect = 0.68
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 152 IIXVEVIKAAACRXPXVKQFHTRQDRFP 235
           I+ VE I A+ CR P VKQFH  + +FP
Sbjct: 126 IMKVEEIAASKCRRPAVKQFHDSKIKFP 153


>BC071920-1|AAH71920.1|  176|Homo sapiens ribosomal protein L18a
           protein.
          Length = 176

 Score = 35.1 bits (77), Expect = 0.68
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 152 IIXVEVIKAAACRXPXVKQFHTRQDRFP 235
           I+ VE I A+ CR P VKQFH  + +FP
Sbjct: 126 IMKVEEIAASKCRRPAVKQFHDSKIKFP 153


>BC066319-1|AAH66319.1|  176|Homo sapiens ribosomal protein L18a
           protein.
          Length = 176

 Score = 35.1 bits (77), Expect = 0.68
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 152 IIXVEVIKAAACRXPXVKQFHTRQDRFP 235
           I+ VE I A+ CR P VKQFH  + +FP
Sbjct: 126 IMKVEEIAASKCRRPAVKQFHDSKIKFP 153


>BC007512-1|AAH07512.1|  176|Homo sapiens ribosomal protein L18a
           protein.
          Length = 176

 Score = 35.1 bits (77), Expect = 0.68
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 152 IIXVEVIKAAACRXPXVKQFHTRQDRFP 235
           I+ VE I A+ CR P VKQFH  + +FP
Sbjct: 126 IMKVEEIAASKCRRPAVKQFHDSKIKFP 153


>AK222647-1|BAD96367.1|  176|Homo sapiens ribosomal protein L18a
           variant protein.
          Length = 176

 Score = 35.1 bits (77), Expect = 0.68
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 152 IIXVEVIKAAACRXPXVKQFHTRQDRFP 235
           I+ VE I A+ CR P VKQFH  + +FP
Sbjct: 126 IMKVEEIAASKCRRPAVKQFHDSKIKFP 153


>AC005796-1|AAC62828.1|  176|Homo sapiens ribosomal protein L18a
           protein.
          Length = 176

 Score = 35.1 bits (77), Expect = 0.68
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 152 IIXVEVIKAAACRXPXVKQFHTRQDRFP 235
           I+ VE I A+ CR P VKQFH  + +FP
Sbjct: 126 IMKVEEIAASKCRRPAVKQFHDSKIKFP 153


>AB007175-1|BAA28596.1|   66|Homo sapiens ribosomal protein L18a
           protein.
          Length = 66

 Score = 35.1 bits (77), Expect = 0.68
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 152 IIXVEVIKAAACRXPXVKQFHTRQDRFP 235
           I+ VE I A+ CR P VKQFH  + +FP
Sbjct: 16  IMKVEEIAASKCRRPAVKQFHDSKIKFP 43


>X80822-1|CAA56788.1|  140|Homo sapiens protein ( H.sapiens mRNA for
           ORF. ).
          Length = 140

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 152 IIXVEVIKAAACRXPXVKQFHTRQDRFP 235
           I+ VE I  + CR P VKQFH  + +FP
Sbjct: 90  IMKVEEIAVSKCRRPAVKQFHDSKIKFP 117


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,359,688
Number of Sequences: 237096
Number of extensions: 2017483
Number of successful extensions: 1661
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22581363208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)