Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E06_e45_10.seq
         (1553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      259   4e-69
SB_34276| Best HMM Match : CsbD (HMM E-Value=1.5)                      30   5.7  
SB_16211| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.6  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  259 bits (635), Expect = 4e-69
 Identities = 124/197 (62%), Positives = 150/197 (76%)
 Frame = +1

Query: 166 EDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKE 345
           +D  K+P VPE++               +  L ++     KRKEIFKRAE+YVKEYR KE
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 346 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRL 525
            DE+R+ + A+  GN+YVP EA+LAFVIRIRG+N VSPKVRK+LQL RLRQINNGVFVRL
Sbjct: 63  VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRL 122

Query: 526 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 705
           NKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K++ +RV +T NS++EK L K  II
Sbjct: 123 NKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGII 182

Query: 706 CVEDLIHEIFTVXEKFK 756
           CVEDLIHEIFTV E FK
Sbjct: 183 CVEDLIHEIFTVGEHFK 199


>SB_34276| Best HMM Match : CsbD (HMM E-Value=1.5)
          Length = 119

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -3

Query: 699 VLFAKSLLDE*VGGDRDTLPVQFGETAFVHQLSDTLQ 589
           VL A +LLDE +G DRD  P Q G+ A      D  Q
Sbjct: 3   VLSAAALLDELMGSDRDLAPDQKGKRAHWSDSEDGAQ 39


>SB_16211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -3

Query: 699 VLFAKSLLDE*VGGDRDTLPVQFGETA 619
           VL A +LLDE +G DRD  P Q G+ A
Sbjct: 3   VLSAAALLDELMGSDRDLAPDQKGKRA 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,366,898
Number of Sequences: 59808
Number of extensions: 606329
Number of successful extensions: 1590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5070719664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)