Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E05_e37_09.seq
         (1513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     81   2e-15
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     81   2e-15
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     80   4e-15
06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667...    29   7.3  

>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 81.0 bits (191), Expect = 2e-15
 Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
 Frame = +2

Query: 59  LNWMIIRNNNAFLVKK---ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 229
           L W I++ NN FLVK+   +N K  F+KEPNN+ N++SY+++GL +KK V +  +  +  
Sbjct: 8   LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDA 67

Query: 230 FTIV-YKKAKATNKPVKNIIRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAIL 406
             ++   K K  N P K   +   +   R+     K  +  N+YR DLTK  L R S++ 
Sbjct: 68  AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVY 127

Query: 407 RS 412
           RS
Sbjct: 128 RS 129


>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 81.0 bits (191), Expect = 2e-15
 Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
 Frame = +2

Query: 59  LNWMIIRNNNAFLVKK---ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 229
           L W +++ NN+FLVK+    N K  FSKEPNN+ N++SY+++GL +KK V V     ++ 
Sbjct: 8   LVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTVTVQPASGKET 67

Query: 230 FTIV-YKKAKATNKPVKNIIRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAIL 406
             ++   K +  NKP     +   +   R+     K  +  N+YR DLTK  L R SA+ 
Sbjct: 68  AVVLSTTKTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVY 127

Query: 407 RS 412
           RS
Sbjct: 128 RS 129


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 80.2 bits (189), Expect = 4e-15
 Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
 Frame = +2

Query: 59  LNWMIIRNNNAFLVKK---ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 229
           L W I++ NN FLVK+   +N K  F+KEPNN+ N++SY+++GL +KK V +  +  +  
Sbjct: 8   LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDA 67

Query: 230 FTIV-YKKAKATNKPVKNIIRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAIL 406
             ++   K K  N P K   +   +   R+     K  +  N+YR DLTK  L R S++ 
Sbjct: 68  AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVY 127

Query: 407 RS 412
           RS
Sbjct: 128 RS 129


>06_03_1314 +
           29266320-29266346,29266463-29266556,29266663-29266712,
           29266798-29266847,29266945-29267053,29267135-29267195,
           29267291-29267343,29267629-29267721,29268091-29268166,
           29268401-29268508,29268596-29268840
          Length = 321

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -1

Query: 292 TTDNVLYRFIGCLGLLINYREALSVRILNDTDGFLMDQAIVSIRVEVSHIV---GFFAER 122
           T + V+  F GC   L+    A  V  L+D D F+  Q I++    V+H++   G F  +
Sbjct: 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLKVGGKFVAK 166

Query: 121 LF 116
           +F
Sbjct: 167 IF 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,831,119
Number of Sequences: 37544
Number of extensions: 511791
Number of successful extensions: 922
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4849681144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)