Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_E05_e37_09.seq
(1513 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457024-1|CAG33305.1| 137|Homo sapiens RPL28 protein. 124 9e-28
BC011582-1|AAH11582.1| 137|Homo sapiens ribosomal protein L28 p... 124 9e-28
BC010182-1|AAH10182.1| 137|Homo sapiens ribosomal protein L28 p... 124 9e-28
BC010173-1|AAH10173.1| 137|Homo sapiens ribosomal protein L28 p... 124 9e-28
U14969-1|AAA85657.1| 137|Homo sapiens ribosomal protein L28 pro... 123 2e-27
AB209627-1|BAD92864.1| 95|Homo sapiens ribosomal protein L28 v... 79 6e-14
AB007179-1|BAA25838.1| 53|Homo sapiens ribosomal protein L28 p... 46 3e-04
>CR457024-1|CAG33305.1| 137|Homo sapiens RPL28 protein.
Length = 137
Score = 124 bits (299), Expect = 9e-28
Identities = 58/126 (46%), Positives = 81/126 (64%)
Frame = +2
Query: 47 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 226
MS+HL WM++RN ++FL+K+ K+ +S EPNN+ NS+RYNGLIH+K VGV D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 227 GFTIVYKKAKATNKPVKNIIRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAIL 406
G +V K+ KP + +R AR L + +++ N YR DL A +RRASAIL
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 407 RSQRPI 424
RSQ+P+
Sbjct: 119 RSQKPV 124
>BC011582-1|AAH11582.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 124 bits (299), Expect = 9e-28
Identities = 58/126 (46%), Positives = 81/126 (64%)
Frame = +2
Query: 47 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 226
MS+HL WM++RN ++FL+K+ K+ +S EPNN+ NS+RYNGLIH+K VGV D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 227 GFTIVYKKAKATNKPVKNIIRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAIL 406
G +V K+ KP + +R AR L + +++ N YR DL A +RRASAIL
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 407 RSQRPI 424
RSQ+P+
Sbjct: 119 RSQKPV 124
>BC010182-1|AAH10182.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 124 bits (299), Expect = 9e-28
Identities = 58/126 (46%), Positives = 81/126 (64%)
Frame = +2
Query: 47 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 226
MS+HL WM++RN ++FL+K+ K+ +S EPNN+ NS+RYNGLIH+K VGV D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 227 GFTIVYKKAKATNKPVKNIIRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAIL 406
G +V K+ KP + +R AR L + +++ N YR DL A +RRASAIL
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINRNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 407 RSQRPI 424
RSQ+P+
Sbjct: 119 RSQKPV 124
>BC010173-1|AAH10173.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 124 bits (299), Expect = 9e-28
Identities = 58/126 (46%), Positives = 81/126 (64%)
Frame = +2
Query: 47 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 226
MS+HL WM++RN ++FL+K+ K+ +S EPNN+ NS+RYNGLIH+K VGV D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 227 GFTIVYKKAKATNKPVKNIIRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAIL 406
G +V K+ KP + +R AR L + +++ N YR DL A +RRASAIL
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 407 RSQRPI 424
RSQ+P+
Sbjct: 119 RSQKPV 124
>U14969-1|AAA85657.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 123 bits (296), Expect = 2e-27
Identities = 57/126 (45%), Positives = 81/126 (64%)
Frame = +2
Query: 47 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 226
MS+HL WM++RN ++FL+K+ K+ +S EPNN+ NS+RYNGLIH+K VGV D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 227 GFTIVYKKAKATNKPVKNIIRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAIL 406
G +V K+ KP + +R AR L + +++ N YR DL A +RRASAIL
Sbjct: 59 GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118
Query: 407 RSQRPI 424
R+Q+P+
Sbjct: 119 RTQKPV 124
>AB209627-1|BAD92864.1| 95|Homo sapiens ribosomal protein L28
variant protein.
Length = 95
Score = 78.6 bits (185), Expect = 6e-14
Identities = 35/68 (51%), Positives = 49/68 (72%)
Frame = +2
Query: 47 MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 226
MS+HL WM++RN ++FL+K+ K+ +S EPNN+ NS+RYNGLIH+K VGV D K
Sbjct: 9 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 66
Query: 227 GFTIVYKK 250
G +V K+
Sbjct: 67 GVVVVIKR 74
>AB007179-1|BAA25838.1| 53|Homo sapiens ribosomal protein L28
protein.
Length = 53
Score = 46.4 bits (105), Expect = 3e-04
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +2
Query: 284 IRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAILRSQRPI 424
+R AR L + +++ N YR DL A +RRASAILRSQ+P+
Sbjct: 4 VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPV 50
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,175,441
Number of Sequences: 237096
Number of extensions: 3121991
Number of successful extensions: 8285
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8241
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22471744940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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