Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E05_e37_09.seq
         (1513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    60   3e-09
Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical pr...    33   0.70 
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    31   2.8  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    31   2.8  

>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 60.5 bits (140), Expect = 3e-09
 Identities = 44/123 (35%), Positives = 63/123 (51%)
 Frame = +2

Query: 47  MSSHLNWMIIRNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRK 226
           MS  L W +IRNN+AFL  +  I K FS E  N+  +NS +Y+GL +K A+ V  +   K
Sbjct: 1   MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58

Query: 227 GFTIVYKKAKATNKPVKNIIRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAIL 406
           G  +  K  K   +P K +        ++  +   +RL K N       K   RRA+AI+
Sbjct: 59  GVVVSTKNEK--GRPAKAVTTSTL---SKTPVASVRRLAK-NAGFNKFNKLAQRRAAAIV 112

Query: 407 RSQ 415
           RSQ
Sbjct: 113 RSQ 115


>Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical
           protein C14B1.5 protein.
          Length = 396

 Score = 32.7 bits (71), Expect = 0.70
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = -1

Query: 286 DNVLYRFIGCLGLLINYREALSVRILNDTDGFLMDQAIVSIRVEVSHIVGFFAERLFDVR 107
           D+   + +GC  LL++Y  +  V I N TDG  M    V+I + +SH++    E     R
Sbjct: 92  DDYTAKSMGC-DLLVHYGHSCLVPIQN-TDGIAMLYVFVNIHINLSHLIDCVKENFQGKR 149

Query: 106 LL 101
           L+
Sbjct: 150 LV 151


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical protein
            T01B7.7 protein.
          Length = 348

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 29/97 (29%), Positives = 32/97 (32%)
 Frame = +3

Query: 888  PXXXTGTSXXXGXKPXFXXRAPXGXPXXSFLGPGAXXLXGPXGSPXXXXXGXPGMXXXGG 1067
            P    G +   G +     R   G P      PG     GP G+P     G PG     G
Sbjct: 197  PLGPQGPNGAPGLRGMRGARGQPGRPGRDG-NPGMPGDCGPPGAPGSD--GKPGSPGGKG 253

Query: 1068 *XXXRPXGLXXTXPXRTPPPALXPXGXXGPXGEXXDP 1178
                RP G     P R PP    P G  GP G    P
Sbjct: 254  DDGERPLG--RPGP-RGPPGEAGPEGPQGPTGRDAYP 287


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.elegans
            collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 29/97 (29%), Positives = 32/97 (32%)
 Frame = +3

Query: 888  PXXXTGTSXXXGXKPXFXXRAPXGXPXXSFLGPGAXXLXGPXGSPXXXXXGXPGMXXXGG 1067
            P    G +   G +     R   G P      PG     GP G+P     G PG     G
Sbjct: 197  PLGPQGPNGAPGLRGMRGARGQPGRPGRDG-NPGMPGDCGPPGAPGSD--GKPGSPGGKG 253

Query: 1068 *XXXRPXGLXXTXPXRTPPPALXPXGXXGPXGEXXDP 1178
                RP G     P R PP    P G  GP G    P
Sbjct: 254  DDGERPLG--RPGP-RGPPGEAGPEGPQGPTGRDAYP 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,000,146
Number of Sequences: 27780
Number of extensions: 426545
Number of successful extensions: 813
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4360398082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)