Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E05_e37_09.seq
         (1513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)            83   5e-16
At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unkn...    82   8e-16

>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
          Length = 143

 Score = 83.0 bits (196), Expect = 5e-16
 Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
 Frame = +2

Query: 59  LNWMIIRNNNAFLVK---KANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 229
           L W I++NNN FLVK   + N K  FSKE NN+TN++SY+++GL +KK V +      + 
Sbjct: 8   LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQA 67

Query: 230 FTIVYKKAKATNKPVKNIIRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAILR 409
             +   K K  NKP  ++ +   K    R        +  N+YR DL KA L R SAI +
Sbjct: 68  VVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISK 127

Query: 410 SQR 418
             R
Sbjct: 128 GLR 130


>At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unknown
           protein chromosome II BAC F6F22 - Arabidopsis
           thaliana,PID:g3687251
          Length = 143

 Score = 82.2 bits (194), Expect = 8e-16
 Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
 Frame = +2

Query: 59  LNWMIIRNNNAFLVK---KANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKG 229
           L W I++ NN FLVK   + N K  FSKE NN+ N+NSY+++GL +KK V +      +G
Sbjct: 8   LIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQG 67

Query: 230 FTIVYKKAKATNKPVKNIIRRPFKAGARRFLFKAKRLLKANHYRTDLTKATLRRASAILR 409
             +   K K  NKP  ++ +   K    R        +  N+YR DL KA L R SAI +
Sbjct: 68  VVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISK 127

Query: 410 SQR 418
             R
Sbjct: 128 GLR 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,889,173
Number of Sequences: 28952
Number of extensions: 377181
Number of successful extensions: 735
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4038570048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)