Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E04_e29_10.seq
         (1529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0372 + 2895807-2895883,2896557-2896647,2896741-2896839,289...    34   0.34 
05_07_0216 + 28461783-28461788,28461837-28462295,28463198-284633...    33   0.60 
02_04_0193 - 20801959-20802583,20803372-20803448,20803530-208036...    31   3.2  
07_03_0715 + 20889399-20890111,20890950-20891060,20891128-208913...    30   5.6  
09_06_0053 - 20537433-20537833,20537910-20538456                       29   9.7  

>03_01_0372 +
           2895807-2895883,2896557-2896647,2896741-2896839,
           2897220-2897268,2897269-2897405,2898027-2898248,
           2898335-2898488,2898574-2898723,2898890-2898978,
           2899632-2899844,2900180-2900314,2900461-2900640,
           2901004-2901111,2901215-2901340,2901421-2901550,
           2901637-2901729,2902067-2902192,2902294-2902304
          Length = 729

 Score = 33.9 bits (74), Expect = 0.34
 Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 6/156 (3%)
 Frame = +3

Query: 210 QTELRDWTKSKHNEEAVTPNNNTNTLK--ENADCNDLSLIPKNRNNLLRQLSKALNSLK- 380
           Q +L++  K +  ++      + N LK   N    ++++  +   + +++L   L   K 
Sbjct: 393 QQKLKNSEKMQLEKKLKESEASLNDLKVTSNMQIENMAMEKRQLESTIKRLMLDLEKEKG 452

Query: 381 -EDIGDPKAMYKELTFFQNRHKQLLN--QKTISPKQVSNNRKTINDMFKKLNMVLLGQAG 551
             +I   + ++ E +  +N+ KQL N     I      ++ K I ++ K+L       A 
Sbjct: 453 KNNILSEQIIHLETSLDENKQKQLENISNTNILADTTKSHEKKIRELLKQLEDERSRSAS 512

Query: 552 LADGSQHLNELYSFQEKLMNSRQKNIPPEQRKEIGQ 659
           + D   HLN L        N  QKNI  E  K++ +
Sbjct: 513 MND---HLNVLQQQLSDAQNYFQKNIACELEKQLSR 545


>05_07_0216 +
           28461783-28461788,28461837-28462295,28463198-28463315,
           28463350-28463609,28465220-28465525
          Length = 382

 Score = 33.1 bits (72), Expect = 0.60
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 342 LLRQLSKALNSLKEDIGDPKAMYKELTFFQNRHKQLLNQKTISPKQVSNNRKT 500
           LLR++  A+  L+E  G+PK  +      Q R+ Q  N      K++ +N KT
Sbjct: 142 LLREIKAAVRRLQELRGEPKRRHTNQQLSQKRNHQKWNTNADEEKKLDSNMKT 194


>02_04_0193 -
           20801959-20802583,20803372-20803448,20803530-20803646,
           20804147-20804250,20804359-20804428,20804547-20804644,
           20804747-20804840,20805269-20805359,20805453-20805545,
           20805635-20805960,20806162-20806641
          Length = 724

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
 Frame = +3

Query: 285 LKENADC-NDLSLIPKNRNNLLRQLSKALNSLKEDIGDPKAMYKELTFFQNRHKQLLNQK 461
           ++  AD  ++L  + +   +  R+L +   S+  + GD   + ++    Q RH + L +K
Sbjct: 326 VRHTADLYHELHALDRFEQDYRRKLEEEKKSVAFERGDTVQIIRQELKSQRRHVKSLKKK 385

Query: 462 TISPKQVSNNRKTINDMFKKLNMVLLGQAGLADGSQHLNE 581
           ++  K + +    + D+   L++ +    G  DG+  LN+
Sbjct: 386 SLWNKMLEDVMDKLVDIVHFLHVEIQESFGTYDGALQLNQ 425


>07_03_0715 +
           20889399-20890111,20890950-20891060,20891128-20891338,
           20891414-20891474,20891719-20891956,20892046-20892196,
           20892415-20892703,20893464-20894207,20894720-20894851,
           20895728-20895965,20896159-20896246,20896422-20896697
          Length = 1083

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 333 RNNLLRQLSKALNSLKEDIGDPKAMYKELTFFQNR 437
           R +L   L  A+NS   +   PKAM K++T++ N+
Sbjct: 662 RKHLTEALDAAINSKNSNSYSPKAMTKKVTYYYNQ 696


>09_06_0053 - 20537433-20537833,20537910-20538456
          Length = 315

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 941  SDWVPSEEDKFRFXQEAXFVARXSXKXGKFSPKR*KNEKPRPAP 1072
            S WVP+ + + R  Q A   A  +   G   P R   ++PR  P
Sbjct: 130  STWVPAAKRRERQQQLAALAASAAATAGGAGPSRDPTKRPRARP 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,965,627
Number of Sequences: 37544
Number of extensions: 758175
Number of successful extensions: 1734
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1730
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4919293792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)