Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E04_e29_10.seq
         (1529 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    27   1.4  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    27   1.4  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   5.8  
AJ441131-2|CAD29631.1|  208|Anopheles gambiae hypothetical prote...    25   5.8  
AJ439398-1|CAD28124.1|  208|Anopheles gambiae hypothetical prote...    25   5.8  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = -1

Query: 881 EWGNISLPXPSFEFDWTLVETECSFPFSTRTFWH*MSGGATFYF--LL**CRGLIKFL*K 708
           EW  + +P    E  +T     C  P+   TF   M     FY   L+  C G I FL  
Sbjct: 204 EWDILEVPAVRNEKFYTC----CDEPYLDITFNITMRRKTLFYTVNLIIPCMG-ISFLTI 258

Query: 707 F*IVIPRDSSEYAVIMLSDLLSLFWWYVFL 618
               +P DS E   + +S LLSL  +++ L
Sbjct: 259 LVFYLPSDSGEKVSLSISILLSLTVFFLLL 288


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 27/115 (23%), Positives = 49/115 (42%)
 Frame = +3

Query: 180 KGKIADQEAFQTELRDWTKSKHNEEAVTPNNNTNTLKENADCNDLSLIPKNRNNLLRQLS 359
           K K+  +E  Q +  +   +K ++E+   N+     K  A+    +   + R   L Q++
Sbjct: 353 KEKLVKEEIKQYD--ELVSAKESKESTLKNSLDKFAKVQANMRATN---ERRKKTLEQIA 407

Query: 360 KALNSLKEDIGDPKAMYKELTFFQNRHKQLLNQKTISPKQVSNNRKTINDMFKKL 524
                L E    PK   KE+   + + + L  QKT    +++ N  T+ D  K L
Sbjct: 408 AEEKRLLELQDVPKKNKKEIEESEAKIESLTRQKTEVEAKLTANLATLKDETKVL 462


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 345 LRQLSKALNSLKEDIGDPKAMYKELTFFQNRHKQLLNQKT 464
           L+   KAL   K+D+   K    E +     H+QLL +KT
Sbjct: 267 LKNAQKALKDAKKDVVTAK---DEKSVLATEHQQLLREKT 303


>AJ441131-2|CAD29631.1|  208|Anopheles gambiae hypothetical protein
           protein.
          Length = 208

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 558 DGSQHLNELYSFQEKLMNSRQKNIPPEQRKEIGQ 659
           + ++H N   +   KLM  + +N PPE+    G+
Sbjct: 150 NNNEHHNTYNARLSKLMQEKTRNAPPERGHRCGR 183


>AJ439398-1|CAD28124.1|  208|Anopheles gambiae hypothetical protein
           protein.
          Length = 208

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 558 DGSQHLNELYSFQEKLMNSRQKNIPPEQRKEIGQ 659
           + ++H N   +   KLM  + +N PPE+    G+
Sbjct: 150 NNNEHHNTYNARLSKLMQEKTRNAPPERGHRCGR 183


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,311,747
Number of Sequences: 2352
Number of extensions: 26684
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 179626590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)