Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_E04_e29_10.seq
(1529 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80837-7|AAB37907.1| 760|Caenorhabditis elegans Hypothetical pr... 35 0.18
Z50109-4|CAA90441.1| 382|Caenorhabditis elegans Hypothetical pr... 33 0.40
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 31 2.9
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 31 2.9
Z92786-2|CAB07211.1| 518|Caenorhabditis elegans Hypothetical pr... 30 3.8
AF016681-20|AAB66167.1| 370|Caenorhabditis elegans Hypothetical... 30 5.0
AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical... 30 5.0
AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical ... 30 5.0
Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical pr... 29 6.6
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 8.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 8.7
>U80837-7|AAB37907.1| 760|Caenorhabditis elegans Hypothetical
protein F07E5.8 protein.
Length = 760
Score = 34.7 bits (76), Expect = 0.18
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = +3
Query: 87 TGXKGRXWLKGIMSKLNISVECTDINSFLSIKGKIADQEAFQTELRDWTKSKHNEEAVTP 266
+G KGR L + + N S+E + LS++ D F+T + K +
Sbjct: 436 SGTKGRSLLSWLKCQKNFSMESVGSTAKLSVEVSTTDYATFETSFNEVAKVVDTTSG-SV 494
Query: 267 NNNTNTLKE--NADCNDLSLIPKNRNNLLRQLSKALNSL 377
NN + LKE N +DLS + KN + +A+ +L
Sbjct: 495 NNIRSLLKEIKNQTTSDLSNL-KNLGKYSKTFGEAVKAL 532
>Z50109-4|CAA90441.1| 382|Caenorhabditis elegans Hypothetical
protein C09H10.6 protein.
Length = 382
Score = 33.5 bits (73), Expect = 0.40
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +3
Query: 528 MVLLGQAGLADGSQHLNELYSFQEKLMNSRQKNIPPEQRKEIGQHYYSIFAAIPRD-DYL 704
+VLLG+ G++DG + + ++ +N ++ +PP RK I Q Y I A D +Y
Sbjct: 194 LVLLGEHGISDGK--YTQAFEDLDRALNIQRNVLPPSSRK-IAQTYILIGNACASDANYD 250
Query: 705 ELLKKFYQTSTSL 743
E ++ F +T L
Sbjct: 251 ETVQYFGKTKDVL 263
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 30.7 bits (66), Expect = 2.9
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 234 KSKHNEEAVTPNNNTNTLKENAD-CNDLSLIPKNRNNLLRQLSKALN-SLKEDIGDPKAM 407
+S EE + N N + E + +L K ++N L++ +A N LKE +GD +
Sbjct: 3134 RSDLEEEKIHLNIGLNKISETEEQVKELQKSLKLKSNELQEKKEAANLKLKEMLGDQQKA 3193
Query: 408 YKELTFFQNRHKQLLNQ 458
+E F + K+L Q
Sbjct: 3194 EEEKKFSEQLQKELAEQ 3210
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 30.7 bits (66), Expect = 2.9
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 234 KSKHNEEAVTPNNNTNTLKENAD-CNDLSLIPKNRNNLLRQLSKALN-SLKEDIGDPKAM 407
+S EE + N N + E + +L K ++N L++ +A N LKE +GD +
Sbjct: 3134 RSDLEEEKIHLNIGLNKISETEEQVKELQKSLKLKSNELQEKKEAANLKLKEMLGDQQKA 3193
Query: 408 YKELTFFQNRHKQLLNQ 458
+E F + K+L Q
Sbjct: 3194 EEEKKFSEQLQKELAEQ 3210
>Z92786-2|CAB07211.1| 518|Caenorhabditis elegans Hypothetical
protein F47H4.4 protein.
Length = 518
Score = 30.3 bits (65), Expect = 3.8
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Frame = +3
Query: 111 LKGIMSKLNISVECTDINSFLSIKG-KIADQEAFQTELRDWTKSKH-NEEAVTPNNNTNT 284
L+G M KLNI VE + + + + ++E +D K + N+E +
Sbjct: 255 LRGFMDKLNIGVEKISLKIYNTTSVLQFDEKEVIYQNRKDNCKVLYDNQEKLVKGGKYAI 314
Query: 285 LKENADCNDLSLIPKNRNNLLRQLSKALNSLKEDIGDPKAMYKEL-TFFQN 434
+ +D S++ KN+ L++L L+ D+GD + +YK + T +N
Sbjct: 315 MA----LHDWSMVMKNQKLKLKELQFTLD---VDLGDHQKLYKTIKTVLEN 358
>AF016681-20|AAB66167.1| 370|Caenorhabditis elegans Hypothetical
protein F22E5.1 protein.
Length = 370
Score = 29.9 bits (64), Expect = 5.0
Identities = 28/118 (23%), Positives = 50/118 (42%)
Frame = +3
Query: 279 NTLKENADCNDLSLIPKNRNNLLRQLSKALNSLKEDIGDPKAMYKELTFFQNRHKQLLNQ 458
N L+ + DL+ I +N NL+ + + + + ++G A+YK + K +L
Sbjct: 101 NILEPSGSFVDLTDIAENSKNLIFASAASDDHFQNEVGTISAIYK----YYPDAKFILYS 156
Query: 459 KTISPKQVSNNRKTINDMFKKLNMVLLGQAGLADGSQHLNELYSFQEKLMNSRQKNIP 632
+ +S + MFK L + + G D + H E Y F+ L+ K P
Sbjct: 157 LGLQAANISK----LKSMFKNLEVRVFNTIGYPDYTNHWME-YRFKPLLLAELLKEHP 209
>AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical
protein C02E7.1 protein.
Length = 1050
Score = 29.9 bits (64), Expect = 5.0
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 330 NRNNL-LRQLSKALNSLKEDIGDPKAMYKELTFFQNRHKQLLNQKTISPKQVSNNRKTIN 506
N ++L +RQLS+ + K DI DPK + + +SP +V +N K
Sbjct: 38 NEHHLDMRQLSEKFSMSKLDIVDPKVSRGLSKQVAAERLESDGRNALSPPKVISNWKLFL 97
Query: 507 DMFKKLNMVLL-GQAGLA 557
FK L +L+ G A L+
Sbjct: 98 RQFKNLLWILMFGAAALS 115
>AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical
protein Y40C7B.1 protein.
Length = 916
Score = 29.9 bits (64), Expect = 5.0
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Frame = +3
Query: 426 FQNRHKQLLNQKTISPKQVSNNRKTINDMFKKLNMVLLGQAGLADGSQH--LNELYSFQE 599
F+ R+++ L ++ +Q K IND F+K + L + L + ++ L + QE
Sbjct: 240 FEKRNQEKLKREEEIKQQNQEREKQINDDFEKRKLEKLQREKLFEKNKQAKLQREKAHQE 299
Query: 600 KLMNSRQKNIPPEQRKEIGQHYYSIFAAIPRDDYLELLK 716
+K + E + IF +P DY E LK
Sbjct: 300 SERRKLEK-LKRENNTPTNRTKREIFQPLPLPDYDEYLK 337
>Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical
protein W10C6.1 protein.
Length = 1461
Score = 29.5 bits (63), Expect = 6.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -1
Query: 611 IH*FLLEGI*FIQMLRTICKTCLTEEYHIQFFKHVIYCLSV 489
+H LLE I + +L + EEY++Q FKH++ +++
Sbjct: 384 MHSILLELIPYAYLLAKVMNYRAFEEYYVQLFKHLLSQIAI 424
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/75 (22%), Positives = 36/75 (48%)
Frame = +3
Query: 402 AMYKELTFFQNRHKQLLNQKTISPKQVSNNRKTINDMFKKLNMVLLGQAGLADGSQHLNE 581
AM ++ F + K + I K +++ +I + KK++ + S + E
Sbjct: 11250 AMRRKRVSFDSSTKSESIEDVIPDKNRDSDKMSITGIKKKMSQKSESAEAQKNESPEVKE 11309
Query: 582 LYSFQEKLMNSRQKN 626
+ SF+EK + S++K+
Sbjct: 11310 ISSFEEKTLKSKKKS 11324
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/75 (22%), Positives = 36/75 (48%)
Frame = +3
Query: 402 AMYKELTFFQNRHKQLLNQKTISPKQVSNNRKTINDMFKKLNMVLLGQAGLADGSQHLNE 581
AM ++ F + K + I K +++ +I + KK++ + S + E
Sbjct: 11250 AMRRKRVSFDSSTKSESIEDVIPDKNRDSDKMSITGIKKKMSQKSESAEAQKNESPEVKE 11309
Query: 582 LYSFQEKLMNSRQKN 626
+ SF+EK + S++K+
Sbjct: 11310 ISSFEEKTLKSKKKS 11324
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,328,597
Number of Sequences: 27780
Number of extensions: 650459
Number of successful extensions: 1775
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1766
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4400652752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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