Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E04_e29_10.seq
         (1529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.14 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    27   0.32 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.99 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   7.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   7.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   7.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 28.7 bits (61), Expect = 0.14
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 603 LMNSRQKNIPPEQRKEIGQHYYSIFAAIPRDDYLELLKKFYQTSTS 740
           L+ SR+ + PPE  K + + Y+ +   +P DD   L  +   +S+S
Sbjct: 408 LIGSRRTSPPPEDWKPLDKCYFCLDGKLPHDDQPPLSPQSDSSSSS 453


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 27.5 bits (58), Expect = 0.32
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = -1

Query: 881 EWGNISLPXPSFEFDWTLVETECSFPFSTRTFWH*MSGGATFYF--LL**CRGLIKFL*K 708
           EW  + +P    E  +T     C  P+   TF   M     FY   L+  C G I FL  
Sbjct: 205 EWDILEVPAVRNEKFYTC----CDEPYLDITFNITMRRKTLFYTVNLIIPCMG-ISFLTV 259

Query: 707 F*IVIPRDSSEYAVIMLSDLLSLFWWYVFL 618
               +P DS E   + +S LLSL  +++ L
Sbjct: 260 LVFYLPSDSGEKVSLSISILLSLTVFFLLL 289


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.8 bits (54), Expect = 0.99
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -1

Query: 815 CSFPFSTRTFWH*MSGGATFYF--LL**CRGLIKFL*KF*IVIPRDSSEYAVIMLSDLLS 642
           C+ P+S  TF   M     FY   L+  C G I FL      +P DS E   +  S LLS
Sbjct: 232 CTEPYSDITFNITMRRKTLFYTVNLIIPCVG-ITFLTVLVFYLPSDSGEKVSLCSSILLS 290

Query: 641 LFWWYVFL 618
           L  +++ L
Sbjct: 291 LTVFFLLL 298


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 737 CRGLIKFL*KF*IVIPRDSSEYAVIMLSDLLSLFWWYVFL 618
           C G I FL      +P DS E   + +S LLSL  +++ L
Sbjct: 247 CVG-ISFLSVLVFYLPSDSGEKVSLSISILLSLTVFFLLL 285


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 786 LALNVRGGHFLFSSLMM*RSDKISLEVLNSH 694
           LAL + G + LF+ +++  S  I++ +LN H
Sbjct: 293 LALPLLGKYLLFTMILVGLSVVITIVILNVH 323


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 626 HTTRTKKGDRTALLQHI 676
           HT RTK GD T ++  I
Sbjct: 23  HTCRTKNGDYTKIMPDI 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 365,997
Number of Sequences: 438
Number of extensions: 8057
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53592000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)