Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E02_e13_10.seq
         (1418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar...   163   4e-41
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    27   4.8  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    27   6.3  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    27   6.3  

>SPAC15E1.06 |vps29||retromer complex subunit
           Vps29|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  163 bits (397), Expect = 4e-41
 Identities = 79/185 (42%), Positives = 115/185 (62%), Gaps = 4/185 (2%)
 Frame = +1

Query: 226 MLVLXLGDLHIPHRCSSXXXXXXXXXXXGRIQHILCTGNLCTKESYEYLKTLASDVHVVR 405
           MLVL +GD HIP R              G+I  I+C GNL +   YEYLK + SD+ +V+
Sbjct: 1   MLVLVIGDFHIPDRAPKLSEKFRQLLIPGKISQIICLGNLTSTSVYEYLKHVCSDLKLVK 60

Query: 406 GDFDENTTYPEQKVITVGQFRIGLIHGHXVVPWGDEESLALVQRQLDVDILISGHTHRFE 585
           G FD ++  P    IT+G F+IG  +GH VVP    E+L+++ R++D DIL+ G TH+F 
Sbjct: 61  GAFDISSKAPIAGKITLGSFKIGYTNGHLVVPQDSPEALSILAREMDADILLFGGTHKFA 120

Query: 586 AYEHENKFYINPGSATGAYSPLY----RSPTPSFVLMDIQSSTVVTYVYKLLGDXVKVER 753
           AYE +  F++NPGSATGA +           PSFVLMD+Q + ++ YVY++    V+VE+
Sbjct: 121 AYELDGCFFVNPGSATGAPNVSAVEDDEKIVPSFVLMDVQGAVLILYVYRIFDGEVRVEK 180

Query: 754 IEYKK 768
           ++Y+K
Sbjct: 181 MQYRK 185


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 577 RFEAYEHENKFYINPGSATGAYSPLYRSPTPSF 675
           +FEA+E+E  F  + G+ +  + P +  PT SF
Sbjct: 22  QFEAFENEFYFKDHLGTISVYHEPYFNGPTTSF 54


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -2

Query: 553 YQHRAASAPVP-GTPRHPRAQXXDHE*GQYETAQLLSPFAQG 431
           Y+   A   VP G P HP  +    + G+Y    L +P A G
Sbjct: 296 YRMSIAEMVVPYGNPEHPHQRKHAFDLGEYGAGYLTNPLALG 337


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 463 FRIGLIHGHXVVPWGDEESLALVQRQLDVDILISGHTH 576
           F IG   GH ++  G   SL L ++Q   + LIS + H
Sbjct: 250 FVIGAYSGHHLLGQGQASSLNLAEQQAAYNSLISYYIH 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,963,833
Number of Sequences: 5004
Number of extensions: 70288
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 788909666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)