Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E02_e13_10.seq
         (1418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0364 - 9457747-9458043,9459815-9459952,9460072-9460141,946...   198   8e-61

>02_02_0364 -
           9457747-9458043,9459815-9459952,9460072-9460141,
           9460928-9460995,9462451-9462582
          Length = 234

 Score =  198 bits (482), Expect(2) = 8e-61
 Identities = 88/151 (58%), Positives = 115/151 (76%), Gaps = 4/151 (2%)
 Frame = +1

Query: 328 LCTGNLC----TKESYEYLKTLASDVHVVRGDFDENTTYPEQKVITVGQFRIGLIHGHXV 495
           LC G  C    TKE ++YLK+L  D+H+ RG++DE+  YPE K +T+GQF++GL HGH V
Sbjct: 78  LCIGLTCYQDDTKEVHDYLKSLCPDLHITRGEYDEDARYPETKTLTIGQFKLGLCHGHQV 137

Query: 496 VPWGDEESLALVQRQLDVDILISGHTHRFEAYEHENKFYINPGSATGAYSPLYRSPTPSF 675
           VPWGD +SLA++QRQLDVDIL++GHTH+F+AY+HE    INPGSATGAYS +     PSF
Sbjct: 138 VPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSITYDVNPSF 197

Query: 676 VLMDIQSSTVVTYVYKLLGDXVKVERIEYKK 768
           VLMDI    VV YVY+L+   VKV++I++KK
Sbjct: 198 VLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 228



 Score = 55.6 bits (128), Expect(2) = 8e-61
 Identities = 23/43 (53%), Positives = 28/43 (65%)
 Frame = +1

Query: 226 MLVLXLGDLHIPHRCSSXXXXXXXXXXXGRIQHILCTGNLCTK 354
           +LVL LGDLH+PHR +            G+IQHI+CTGNLC K
Sbjct: 2   VLVLALGDLHVPHRAADLPAKFKSMLVPGKIQHIICTGNLCIK 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,787,451
Number of Sequences: 37544
Number of extensions: 462369
Number of successful extensions: 1077
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4490015796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)