Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_E02_e13_10.seq
         (1418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              24   3.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    24   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   8.5  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 364 EYLKTLASDVHVVRGDFDE 420
           E  +TL S+VH+ + ++DE
Sbjct: 34  ENCETLQSEVHITKDEYDE 52


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 364 EYLKTLASDVHVVRGDFDE 420
           E  +TL S+VH+ + ++DE
Sbjct: 34  ENCETLQSEVHITKDEYDE 52


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -3

Query: 732 AEQLVHVRNDSRTLYVHQYERWCWTPVKWAISASG*ARVNVK 607
           AE      + S TL V+   RW   P   A +    ARV  K
Sbjct: 660 AENAAGTASHSTTLTVNVPPRWILEPTDKAFAQGSDARVECK 701


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 279,869
Number of Sequences: 438
Number of extensions: 5800
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 49465956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)