Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_D12_e92_08.seq
         (1516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0030 + 25209067-25209130,25209231-25209400,25210482-252116...    33   0.78 
01_05_0027 - 17331888-17331968,17332236-17332806,17333190-173333...    30   5.5  
09_02_0495 + 9880714-9881196                                           29   9.6  

>02_05_0030 +
           25209067-25209130,25209231-25209400,25210482-25211668,
           25211695-25212011,25212669-25213374,25214248-25215448
          Length = 1214

 Score = 32.7 bits (71), Expect = 0.78
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 836 CEYFGRGPMSSGGRGHLRLIGF 771
           C Y G G  +  GRGHLR+IG+
Sbjct: 341 CGYLGVGESAGAGRGHLRMIGY 362


>01_05_0027 - 17331888-17331968,17332236-17332806,17333190-17333335,
            17333412-17333459
          Length = 281

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 17/57 (29%), Positives = 21/57 (36%)
 Frame = -3

Query: 1436 RFXAGXXXGFXAPXLXXPPVXRPXXFPXXXXRXXPPGWXGAQKXGXPPPXGXGXTXG 1266
            R   G   G     +   P+ RP        +  PPGW GA + G   P   G T G
Sbjct: 55   RTPGGQPVGPSRQRMPTAPLLRPLS---SRVKRPPPGWIGAARAGTSGPEVAGQTTG 108


>09_02_0495 + 9880714-9881196
          Length = 160

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 21/79 (26%), Positives = 23/79 (29%)
 Frame = +1

Query: 1246 PXGXXXXPXVXPXPXGGGXPXFWAPXQPGGXXLXXXXGKXXGRXTGGXXRXGAXXPXXXP 1425
            P G    P + P P  GG    + P  P G       G   G   G     G   P   P
Sbjct: 29   PGGSCPYPCLPP-PIAGGAVNSYPPPPPAGSSSSSSSGGGDG---GAGGLFGGTYPPPPP 84

Query: 1426 AXXRXGXNTPXGXXXPXGP 1482
                     P G   P GP
Sbjct: 85   GVMPGAFAPPFGGGFPYGP 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,651,399
Number of Sequences: 37544
Number of extensions: 497433
Number of successful extensions: 791
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4861283252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)