Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_D12_e92_08.seq
         (1516 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC004932-1|AAQ96876.1|  155|Homo sapiens unknown protein.              36   0.29 
AK022762-1|BAB14233.1|  155|Homo sapiens protein ( Homo sapiens ...    34   1.6  

>AC004932-1|AAQ96876.1|  155|Homo sapiens unknown protein.
          Length = 155

 Score = 36.3 bits (80), Expect = 0.29
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 1107 HKNFWVLKKPXGXXQLTPPXXTF-XPRGGPRLSPXKTPKSGAVAXXR 1244
            ++NFW+L+ P G    +P       PR  PRL+  ++P +GA    R
Sbjct: 90   NRNFWILRLPPGSKGESPKTTPSPSPRSSPRLNKGRSPATGAALTPR 136


>AK022762-1|BAB14233.1|  155|Homo sapiens protein ( Homo sapiens cDNA
            FLJ12700 fis, clone NT2RP1000721. ).
          Length = 155

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 1107 HKNFWVLKKPXGXXQLTPPXXTF-XPRGGPRLSPXKTPKSGAVAXXR 1244
            ++N W+L+ P G    +P       PR  PRL+  ++P +GA    R
Sbjct: 90   NRNLWILRLPPGSKGESPKTTPSPSPRSSPRLNKGRSPATGAALTPR 136


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,905,036
Number of Sequences: 237096
Number of extensions: 2946749
Number of successful extensions: 4613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4583
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22526554074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)