Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_D12_e92_08.seq
         (1516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    31   2.8  
AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein...    30   4.9  
AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe...    30   4.9  
AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    30   4.9  
AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe6...    30   4.9  
Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical pr...    29   6.5  

>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -3

Query: 1403 APXLXXPPVXRPXXFPXXXXRXXPPG-WXGAQKXGXPPP 1290
            AP    PP  R   +P    +  PPG W G Q  G PPP
Sbjct: 221  APQAGPPPQMR-HQYPPHSQQQAPPGYWDGYQGYGGPPP 258


>AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein
           protein.
          Length = 577

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 933 PKFHGLPAPPPIXXNAXLNYCXXFEKKKQPQSLRIFW 823
           P  H LP PPPI      +    +EK + PQ    +W
Sbjct: 128 PVRHPLPPPPPIMEEEPKDLPPGWEKHEDPQGYSYYW 164


>AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform c protein.
          Length = 554

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 933 PKFHGLPAPPPIXXNAXLNYCXXFEKKKQPQSLRIFW 823
           P  H LP PPPI      +    +EK + PQ    +W
Sbjct: 105 PVRHPLPPPPPIMEEEPKDLPPGWEKHEDPQGYSYYW 141


>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 933 PKFHGLPAPPPIXXNAXLNYCXXFEKKKQPQSLRIFW 823
           P  H LP PPPI      +    +EK + PQ    +W
Sbjct: 246 PVRHPLPPPPPIMEEEPKDLPPGWEKHEDPQGYSYYW 282


>AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform b protein.
          Length = 640

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 933 PKFHGLPAPPPIXXNAXLNYCXXFEKKKQPQSLRIFW 823
           P  H LP PPPI      +    +EK + PQ    +W
Sbjct: 216 PVRHPLPPPPPIMEEEPKDLPPGWEKHEDPQGYSYYW 252


>Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical protein
            C15A11.6 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -3

Query: 1331 PGWXGAQKXGXPPPXGXGXTXGXXXXPXGPXXGNGP 1224
            PG  G +  G P P G   + G    P  P  GN P
Sbjct: 195  PGKSGQRGRGLPGPSGAPGSQGPPGAPGQPGSGNAP 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,415,410
Number of Sequences: 27780
Number of extensions: 413369
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4348758262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)