Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_D11_e84_07.seq
(1507 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 280 2e-75
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 48 2e-05
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.009
SB_13788| Best HMM Match : rve (HMM E-Value=0.00016) 32 1.4
SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.4
SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.2
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.5
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 7.3
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.7
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 280 bits (687), Expect = 2e-75
Identities = 124/168 (73%), Positives = 149/168 (88%)
Frame = -1
Query: 883 GNIPVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 704
G + F+P+NITTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+++RG VAGD KNNPP
Sbjct: 134 GTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFNVKNVSVKDIKRGNVAGDFKNNPP 193
Query: 703 RGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSI 524
+ FTAQVIV+NHPG+I GY+PVLDCHTAHIACKF ++ EK+DRR+GK EDNPK I
Sbjct: 194 KPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKKLEDNPKMI 253
Query: 523 KSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVN 380
K+GDAA+V ++PSKP+CVE+F EFPPLGRFAVRDM+QTVAVGVIK+V+
Sbjct: 254 KTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVAVGVIKSVD 301
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 48.0 bits (109), Expect = 2e-05
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -1
Query: 571 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 422
+D++TGK + P+ IK AI L +C+E F +F +GRF +RD
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 39.1 bits (87), Expect = 0.009
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = -1
Query: 508 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 392
A V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_13788| Best HMM Match : rve (HMM E-Value=0.00016)
Length = 508
Score = 31.9 bits (69), Expect = 1.4
Identities = 25/80 (31%), Positives = 39/80 (48%)
Frame = -2
Query: 810 YKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTH 631
++ L+ VT+ VST T LS T++ R TH Q+S+ S C +Q + Q D
Sbjct: 19 FQDLFSVTLEVSTL-TALSAYYEGATVERRRAHTH----QSSENLSCCRRSQEECQVDER 73
Query: 630 LYWIATQPT*PANLPKSKRK 571
L W + P + +K+K
Sbjct: 74 LIWSSRCTKKPPSKEAAKKK 93
>SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 31.5 bits (68), Expect = 1.8
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -1
Query: 634 TPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVE 467
TPVL TAH+ K ++ + D P ++KS ++VN V S L E
Sbjct: 223 TPVLRIKTAHVTDKDNRVRSVLIIDNISQAPDTPATLKSSSDSVVNSVGSVGLVAE 278
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 31.1 bits (67), Expect = 2.4
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = -1
Query: 850 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVI 671
T + S++ + + G + + + ELRRG V D P R F A V
Sbjct: 358 TVRILSLKRNRAPCRVVRAGQSASAALSGIERHELRRGMVMTDPSLEP-RACMCFWADVY 416
Query: 670 VLNHPGQISNGY 635
+L HP IS +
Sbjct: 417 LLFHPAAISKRF 428
>SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 757
Score = 30.3 bits (65), Expect = 4.2
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = -3
Query: 464 LPGIPTPRSFRRA*HEADGRRRCNKGCELQGSRWWQSHQSCRKSHQGQEVASTVNSSVLY 285
L G+P+ F++ H++ RRR + E+ GSR + SH+ Q +V+ +
Sbjct: 166 LRGLPSDNVFKKGMHKSLRRRREDVPDEVDGSRGFDVDNEEMVSHENQVFNKSVDLNPGE 225
Query: 284 TTAILHSPKGVQK 246
+LH + +++
Sbjct: 226 FANLLHRNRNIKE 238
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 29.9 bits (64), Expect = 5.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 606 T*PANLPKSKRKSTVVLVNQQRTTLNPLNLVMPP 505
T PA P + RK+T Q RTT P PP
Sbjct: 1459 TVPATKPPTTRKTTTATTTQGRTTRKPTTTAEPP 1492
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 7.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 502 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 413
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 29.1 bits (62), Expect = 9.7
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -1
Query: 607 HIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKP 479
HIA K E+K D ++ K+ + PK++ SGD ++VP++P
Sbjct: 74 HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,958,120
Number of Sequences: 59808
Number of extensions: 791834
Number of successful extensions: 2262
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2249
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4882915232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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