Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_D11_e84_07.seq
(1507 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 278 6e-75
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 278 6e-75
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 278 6e-75
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 85 2e-16
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 46 7e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 46 7e-05
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 39 0.008
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr... 32 1.2
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 32 1.2
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 32 1.2
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 32 1.2
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 31 2.1
Z68117-4|CAA92180.1| 589|Caenorhabditis elegans Hypothetical pr... 30 4.9
U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical pr... 30 4.9
Z81476-10|CAN86579.1| 224|Caenorhabditis elegans Hypothetical p... 29 6.5
Z81476-1|CAB03921.2| 431|Caenorhabditis elegans Hypothetical pr... 29 6.5
AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical ... 29 6.5
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 29 8.6
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 29 8.6
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 29 8.6
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 29 8.6
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 29 8.6
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 29 8.6
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 29 8.6
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 29 8.6
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 278 bits (682), Expect = 6e-75
Identities = 128/167 (76%), Positives = 144/167 (86%)
Frame = -1
Query: 883 GNIPVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 704
G + FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P
Sbjct: 241 GMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPA 300
Query: 703 RGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSI 524
+ A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK ED PK +
Sbjct: 301 KEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFL 360
Query: 523 KSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 383
KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 361 KSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 278 bits (682), Expect = 6e-75
Identities = 128/167 (76%), Positives = 144/167 (86%)
Frame = -1
Query: 883 GNIPVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 704
G + FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P
Sbjct: 275 GMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPA 334
Query: 703 RGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSI 524
+ A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK ED PK +
Sbjct: 335 KEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFL 394
Query: 523 KSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 383
KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 395 KSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 278 bits (682), Expect = 6e-75
Identities = 128/167 (76%), Positives = 144/167 (86%)
Frame = -1
Query: 883 GNIPVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 704
G + FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P
Sbjct: 275 GMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPA 334
Query: 703 RGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSI 524
+ A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK ED PK +
Sbjct: 335 KEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFL 394
Query: 523 KSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 383
KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 395 KSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 84.6 bits (200), Expect = 2e-16
Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 1/170 (0%)
Frame = -1
Query: 889 QLGNIPVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNN 710
Q G+ V P +V + + V GDN+ F +K + EL+ G++ +
Sbjct: 365 QKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFIICSPDSL 424
Query: 709 PPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPK 530
G F A+V+VL H I++GY+ VL +A + +D++TG+ + K
Sbjct: 425 AKTGRV-FDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTGE--KKRAK 481
Query: 529 SIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 383
+K + I+ L +P +E F+E+P LGRF +RD +T+A+G V+K V
Sbjct: 482 FVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 46.0 bits (104), Expect = 7e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = -1
Query: 688 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDA 509
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 487 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 546
Query: 508 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 383
A+V + + +E+F LGR R T+A G+++ V
Sbjct: 547 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 46.0 bits (104), Expect = 7e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = -1
Query: 688 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDA 509
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 505 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 564
Query: 508 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 383
A+V + + +E+F LGR R T+A G+++ V
Sbjct: 565 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 39.1 bits (87), Expect = 0.008
Identities = 25/96 (26%), Positives = 43/96 (44%)
Frame = -1
Query: 841 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN 662
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 661 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 554
HP I Y +L + + ++V RTG
Sbjct: 479 HPTTIKPNYQAMLHIGSVRQTATLVSMGKEV-LRTG 513
>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
protein F36H2.3 protein.
Length = 1388
Score = 31.9 bits (69), Expect = 1.2
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = +3
Query: 666 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTS 845
++ +C V S+ P G + + + N T T + PT + T C +T +TS
Sbjct: 273 TSSSCRVPSSTPNGNIVYSA-------NVATSTSINSVPTATRATVLCSLGHVPTTSVTS 325
Query: 846 VVMLAGAKTGILPSCLXKEDV 908
+ G LP+CL D+
Sbjct: 326 SKCVDGEWEPSLPTCLSLLDI 346
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 31.9 bits (69), Expect = 1.2
Identities = 35/157 (22%), Positives = 66/157 (42%)
Frame = -1
Query: 853 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQV 674
+ + + +E + + +A PGD +G ++ + K++RRG V + + + AQ+
Sbjct: 296 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQL 354
Query: 673 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNL 494
VL TP+ + + H+ + V R GK + G++A V L
Sbjct: 355 YVLKE--SEGGAKTPIANYFSEHVFSLTWDSGASV-RIIGKD------FVMPGESAEVEL 405
Query: 493 VPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 383
+ + +E P RF +R +T+ GV V
Sbjct: 406 SLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 436
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 31.9 bits (69), Expect = 1.2
Identities = 35/157 (22%), Positives = 66/157 (42%)
Frame = -1
Query: 853 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQV 674
+ + + +E + + +A PGD +G ++ + K++RRG V + + + AQ+
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQL 355
Query: 673 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNL 494
VL TP+ + + H+ + V R GK + G++A V L
Sbjct: 356 YVLKE--SEGGAKTPIANYFSEHVFSLTWDSGASV-RIIGKD------FVMPGESAEVEL 406
Query: 493 VPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 383
+ + +E P RF +R +T+ GV V
Sbjct: 407 SLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 437
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 31.9 bits (69), Expect = 1.2
Identities = 35/157 (22%), Positives = 66/157 (42%)
Frame = -1
Query: 853 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQV 674
+ + + +E + + +A PGD +G ++ + K++RRG V + + + AQ+
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQL 355
Query: 673 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNL 494
VL TP+ + + H+ + V R GK + G++A V L
Sbjct: 356 YVLKE--SEGGAKTPIANYFSEHVFSLTWDSGASV-RIIGKD------FVMPGESAEVEL 406
Query: 493 VPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 383
+ + +E P RF +R +T+ GV V
Sbjct: 407 SLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 437
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 31.1 bits (67), Expect = 2.1
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = -3
Query: 371 SRWWQSHQSCRKSHQGQEVASTVNSSVLYTTAILHSPKGVQKERRATN 228
SR+ H S S G EV S +SS+ +T L+S K ++ RRA N
Sbjct: 3717 SRFLNMHNSGSDSDSGSEVRSDSSSSLGGSTESLNSSKKGKRARRAMN 3764
>Z68117-4|CAA92180.1| 589|Caenorhabditis elegans Hypothetical
protein F45E6.2 protein.
Length = 589
Score = 29.9 bits (64), Expect = 4.9
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -1
Query: 904 SSFXRQLGNIPVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 725
S+F L N P F P E+ S+ + QE+ + GF+ +N + R G G
Sbjct: 10 SNFDDLLHN-PNFPPQFDQLELDSLLYGTDESQESTSSSSFGFSDQNAGFRS-RDGGSLG 67
Query: 724 DSK--NNPPRGAADFT 683
DS ++PP A+FT
Sbjct: 68 DSSSDSSPPLSCANFT 83
>U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical
protein C10G11.6 protein.
Length = 425
Score = 29.9 bits (64), Expect = 4.9
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 623 GLPHSPHSLQICRNQRESRPSYW*INR 543
GL HSPHS N R S P ++ INR
Sbjct: 47 GLVHSPHSSFTTENLRSSDPMFFDINR 73
>Z81476-10|CAN86579.1| 224|Caenorhabditis elegans Hypothetical
protein C25F9.13 protein.
Length = 224
Score = 29.5 bits (63), Expect = 6.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 564 VVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSPSRNSHP 445
++L++ T L L + P + W PPS C P+ ++ P
Sbjct: 149 LILISSLITCFLNLKLSIVPSTKWRPPSSCTMYPANSTFP 188
>Z81476-1|CAB03921.2| 431|Caenorhabditis elegans Hypothetical
protein C25F9.1 protein.
Length = 431
Score = 29.5 bits (63), Expect = 6.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 564 VVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSPSRNSHP 445
++L++ T L L + P + W PPS C P+ ++ P
Sbjct: 149 LILISSLITCFFNLKLEIVPSTKWRPPSSCTMYPANSTFP 188
>AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical
protein Y71D11A.1 protein.
Length = 506
Score = 29.5 bits (63), Expect = 6.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 591 LPKSKRKSTVVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWS 466
LPK+ T V + TT+ P +PP +T PP +S
Sbjct: 264 LPKTTVAPTTTTVPRTTTTVPPTTTTVPPTTTTVPPITTTYS 305
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 29.1 bits (62), Expect = 8.6
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 389 GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 216
GCE++ ++ H +CR S H+ AS +S V L +P +K+R T+ L
Sbjct: 493 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 551
Query: 215 Y 213
Y
Sbjct: 552 Y 552
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 29.1 bits (62), Expect = 8.6
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 389 GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 216
GCE++ ++ H +CR S H+ AS +S V L +P +K+R T+ L
Sbjct: 707 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 765
Query: 215 Y 213
Y
Sbjct: 766 Y 766
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 29.1 bits (62), Expect = 8.6
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 389 GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 216
GCE++ ++ H +CR S H+ AS +S V L +P +K+R T+ L
Sbjct: 843 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 901
Query: 215 Y 213
Y
Sbjct: 902 Y 902
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 29.1 bits (62), Expect = 8.6
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 389 GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 216
GCE++ ++ H +CR S H+ AS +S V L +P +K+R T+ L
Sbjct: 892 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 950
Query: 215 Y 213
Y
Sbjct: 951 Y 951
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 29.1 bits (62), Expect = 8.6
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 389 GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 216
GCE++ ++ H +CR S H+ AS +S V L +P +K+R T+ L
Sbjct: 892 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 950
Query: 215 Y 213
Y
Sbjct: 951 Y 951
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 29.1 bits (62), Expect = 8.6
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 389 GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 216
GCE++ ++ H +CR S H+ AS +S V L +P +K+R T+ L
Sbjct: 884 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 942
Query: 215 Y 213
Y
Sbjct: 943 Y 943
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 29.1 bits (62), Expect = 8.6
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 389 GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 216
GCE++ ++ H +CR S H+ AS +S V L +P +K+R T+ L
Sbjct: 895 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 953
Query: 215 Y 213
Y
Sbjct: 954 Y 954
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 29.1 bits (62), Expect = 8.6
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 389 GCELQGSRWWQSHQSCRKS--HQGQEVASTVNSSVLYTTAILHSPKGVQKERRATNSFLF 216
GCE++ ++ H +CR S H+ AS +S V L +P +K+R T+ L
Sbjct: 896 GCEIESRNFFPDHANCRHSCAHKYATPAS-FSSKVYIPPGELSTPVPPRKDRLTTSLKLT 954
Query: 215 Y 213
Y
Sbjct: 955 Y 955
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,388,909
Number of Sequences: 27780
Number of extensions: 592131
Number of successful extensions: 1686
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1684
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4339584726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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