Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_D11_e84_07.seq
(1507 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 326 2e-91
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 320 2e-89
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 235 5e-64
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 109 5e-26
AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alph... 27 0.32
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 24 3.9
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 23 9.1
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 326 bits (802), Expect = 2e-91
Identities = 152/169 (89%), Positives = 160/169 (94%)
Frame = -1
Query: 883 GNIPVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 704
G + FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP
Sbjct: 275 GMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 334
Query: 703 RGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSI 524
+GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFA+IKEK DRR GK+TE+NPKSI
Sbjct: 335 KGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTTEENPKSI 394
Query: 523 KSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNF 377
KSGDAAIV LVPSKP+C E+FQEFPPLGRFAVRDMRQTVAVGVIKAV F
Sbjct: 395 KSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVTF 443
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 320 bits (786), Expect = 2e-89
Identities = 149/169 (88%), Positives = 159/169 (94%)
Frame = -1
Query: 883 GNIPVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 704
G + FAPA +TTEVKSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP
Sbjct: 275 GMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPP 334
Query: 703 RGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSI 524
RGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE+NPKSI
Sbjct: 335 RGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSI 394
Query: 523 KSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNF 377
KSGDAAIV L P+KP+CVE+FQEFPPLGRFAVRDMRQTVAVGVIK+V F
Sbjct: 395 KSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTF 443
Score = 22.6 bits (46), Expect = 9.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -2
Query: 159 HTPQMFCYNCKLKCKFIE 106
+TP + C+ + CKF E
Sbjct: 357 YTPVLDCHTAHIACKFAE 374
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 235 bits (576), Expect = 5e-64
Identities = 109/119 (91%), Positives = 114/119 (95%)
Frame = -1
Query: 838 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNH 659
KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PPRGAADFTAQVIVLNH
Sbjct: 1 KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60
Query: 658 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 482
PGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE+NPKSIKSGDAAIV L P+K
Sbjct: 61 PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119
Score = 22.6 bits (46), Expect = 9.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -2
Query: 159 HTPQMFCYNCKLKCKFIE 106
+TP + C+ + CKF E
Sbjct: 68 YTPVLDCHTAHIACKFAE 85
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 109 bits (263), Expect = 5e-26
Identities = 51/57 (89%), Positives = 53/57 (92%)
Frame = -1
Query: 883 GNIPVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 713
G + FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN
Sbjct: 218 GMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 274
>AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alpha
protein precursor protein.
Length = 153
Score = 27.5 bits (58), Expect = 0.32
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 407 RRRCNKGCELQGSRWWQSHQSCRKSHQGQEVASTVN 300
R RC+ ++ GS+ WQ +SC + E ++V+
Sbjct: 54 RGRCSSYLQVSGSKIWQMERSCMCCQESGEREASVS 89
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 23.8 bits (49), Expect = 3.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 716 KQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSP 606
K TQ S + + + P S +R HT G+P P
Sbjct: 1048 KTYTQYSVVVQAFNKVGSGPMSEERRQHTAEGVPEQP 1084
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 22.6 bits (46), Expect = 9.1
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 383 HSLYYTDGDRLPHVTHGETTEGWEFLEG-LHTQGLGGNQVDNG 508
H LYY D ++ + + E +E + L+TQ G NG
Sbjct: 276 HGLYYVDTEQFSNPQYEENNVQYEGSQDILNTQSFGKVVSKNG 318
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,225
Number of Sequences: 438
Number of extensions: 7388
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52635000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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