Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_D10_e76_08.seq
         (1521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    27   0.37 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   2.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   7.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 27.1 bits (57), Expect = 0.37
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 468 RKXDTGSEPXTXEXHRPNTPPNGXPXXXP 554
           +K D  S+       +P TPP+G P   P
Sbjct: 213 QKSDADSDSDVVNLSKPGTPPSGEPGNGP 241


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 13/50 (26%), Positives = 16/50 (32%)
 Frame = +3

Query: 405 PXEKGTTNXQRRTXXXXXEADRKXDTGSEPXTXEXHRPNTPPNGXPXXXP 554
           P    + + Q        +  R   T   P     H P TPPN  P   P
Sbjct: 68  PSSDTSQDLQHSYQSPQTQPARFYSTPIVPHFAYNHNPLTPPNSEPLVSP 117


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +3

Query: 363 GXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTG 485
           G     A  GRL D   +G  +          EADR  D G
Sbjct: 285 GCHILVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMG 325


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.133    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,967
Number of Sequences: 336
Number of extensions: 2136
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45681550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)